Co-expression analysis

Gene ID At1g34530
Gene name transposable element gene
Module size 7 genes
NF 0.99
%ile 100.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g345303766917transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.90At1g331303766887transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.92At1g362603766987transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.91At1g438403767325transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.85At1g528503767446transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
1.00100.00.95At2g131603768696transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.9296.00.85At1g361903766981transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.499.7E-MEXP-509-raw-cel-829148666
20.599.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
19.699.6E-ATMX-34-raw-cel-1563627275
17.799.5GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
17.799.5GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
17.299.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
16.199.5GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
15.599.5GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
12.399.3E-ATMX-34-raw-cel-1563627293
12.099.3E-MEXP-509-raw-cel-829148385
10.999.2GSM142883CW001_ATH1_A1.2-WestC-wsbGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutantsLink to GEO
10.199.2E-MEXP-807-raw-cel-1173272921

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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