Co-expression analysis

Gene ID At1g34420
Gene name leucine-rich repeat family protein / protein kinase family protein
Module size 5 genes
NF 0.24
%ile 24.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.157.81.00At1g34420840345leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.H.G.S.X.
0.4457.20.82At5g22540832315unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.84At4g26120828718ankyrin repeat family protein / BTB/POZ domain-containing proteinF:protein binding;P:response to chitin;C:cellular_component unknown;OMPBFVO.I.H.G.S.X.
0.3338.10.81At5g48410834896ATGLR1.3member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.3133.80.81At3g04220819577disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
102.599.9GSM134312Penfield_1-14_embryo-ABA_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
66.199.8GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
65.699.8GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
56.299.8E-MEXP-849-raw-cel-1181980982
55.199.8GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
48.899.8GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
46.499.8GSM134311Penfield_1-13_embryo-ABA_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
43.599.8GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
42.899.8GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
35.299.7GSM134313Penfield_1-15_embryo-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
35.099.7GSM134303Penfield_1-5_endosperm-ABA_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
34.299.7GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
33.099.7GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
33.099.7GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
32.799.7GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
31.399.7GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
30.899.7GSM134315Penfield_1-17_embryo-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
29.999.7GSM134304Penfield_1-6_endosperm-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
27.599.7E-MEXP-828-raw-cel-1156922905
27.399.7GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
27.399.7E-MEXP-828-raw-cel-1156922342
27.299.7E-MEXP-828-raw-cel-1156922467
25.299.6E-MEXP-828-raw-cel-1156922368
23.799.6E-MEXP-828-raw-cel-1156922613
22.099.6E-MEXP-828-raw-cel-1156922968
21.699.6E-MEXP-1299-raw-cel-1519902871
20.699.6GSM134302Penfield_1-4_endosperm-ABA_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
20.099.6E-MEXP-509-raw-cel-829148525
19.999.6GSM157327Hammond_3-11_Potassium-starved-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
19.699.6E-MEXP-509-raw-cel-829148561
19.499.6E-MEXP-828-raw-cel-1156922595
18.699.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
18.299.5GSM158702HY213-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
18.199.5GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
17.999.5E-MEXP-509-raw-cel-829148348
17.999.5E-MEXP-509-raw-cel-829148456
17.899.5E-MEXP-828-raw-cel-1156922872
17.899.5GSM157324Hammond_3-17_Potassium-starved-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.799.5GSM158703WT-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
17.599.5GSM157328Hammond_3-12_Caesium-treated-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.399.5E-MEXP-828-raw-cel-1156922455
17.399.5E-MEXP-828-raw-cel-1156922296
17.399.5GSM134314Penfield_1-16_embryo-PAC_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
17.299.5E-MEXP-828-raw-cel-1156922809
17.299.5GSM134316Penfield_1-18_embryo-PAC_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
16.799.5E-MEXP-828-raw-cel-1156922829
16.399.5Capper_1-9_E6_estradiol
15.999.5E-MEXP-849-raw-cel-1181980990
15.099.4E-MEXP-828-raw-cel-1156922944
14.899.4E-MEXP-828-raw-cel-1156922846
14.799.4E-MEXP-828-raw-cel-1156922533
14.499.4GSM158701HY213-MOCK-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
14.499.4Capper_1-10_E6_water
14.399.4E-MEXP-828-raw-cel-1156922572
14.299.4GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.099.4Capper_1-7_D9_estradiol
13.999.4E-MEXP-828-raw-cel-1156922708
13.999.4E-MEXP-828-raw-cel-1156922318
13.799.4E-MEXP-828-raw-cel-1156922634
13.799.4E-MEXP-828-raw-cel-1156922794
13.499.4GSM142730CH001_ATH1_A009-Hampt-wsc_repeatGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
13.399.4GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.399.4E-MEXP-828-raw-cel-1156922553
13.299.4E-MEXP-849-raw-cel-1181980998
13.099.4GSM133400Knight_2-3_sfr6-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
13.099.4E-MEXP-828-raw-cel-1156922987
13.099.4E-MEXP-828-raw-cel-1156922750
12.799.3GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.699.3E-TABM-63-raw-cel-681137195
12.699.3E-MEXP-828-raw-cel-1156922772
12.599.3E-MEXP-1443-raw-cel-1581869515
12.599.3GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.399.3E-MEXP-828-raw-cel-1156922731
12.399.3E-MEXP-1299-raw-cel-1519902498
12.299.3E-MEXP-828-raw-cel-1156922923
12.099.3GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.799.3GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3GSM142728CH001_ATH1_A007-Hampt-c4bGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
11.699.3Capper_1-11_E10_estradiol
11.599.3Capper_1-4_B8_water
11.499.3GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
11.399.3E-MEXP-828-raw-cel-1156922485
11.099.2E-MEXP-509-raw-cel-829148420
10.999.2GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
10.999.2Capper_1-1_A3_estradiol
10.999.2E-MEXP-828-raw-cel-1156922509
10.999.2Capper_1-8_D9_water
10.899.2GSM128703Heinekamp_1-12_cs-root_Rep3_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137Link to GEO
10.699.2E-MEXP-828-raw-cel-1156922891
10.699.2E-ATMX-35-raw-cel-1574334832
10.699.2GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.499.2E-MEXP-828-raw-cel-1156922684
10.399.2E-MEXP-828-raw-cel-1156922659
10.299.2GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.899.1GSM7717804h low CO2 + light replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
9.899.1GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.899.1GSM7718004h low CO2 + dark replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
9.799.1GSM184560Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.799.1GSM157325Hammond_3-18_Caesium-treated-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
9.599.1GSM184561Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.299.1GSM142731CH001_ATH1_A010-Hampt-akcGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
9.299.1GSM157323Hammond_3-16_Control-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
9.299.1GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.099.1GSM25316324h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
9.099.1Capper_1-12_E10_water
9.099.1GSM128699Heinekamp_1-8_cs-root_Rep2_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137Link to GEO
8.999.0E-MEXP-509-raw-cel-829148129
8.899.0GSM2531618h into an extended nightAGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
8.899.0GSM157315Hammond_3-5_Potassium-starved-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
8.799.0E-MEXP-509-raw-cel-829148597
8.799.0E-MEXP-509-raw-cel-829148772
8.799.0E-MEXP-828-raw-cel-1156922416
8.699.0E-MEXP-509-raw-cel-829148090

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0741GO:0006874Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.Link to AmiGO
0.0161GO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.Link to AmiGO
0.0151GO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage