Co-expression analysis

Gene ID At1g34410
Gene name ARF21 (AUXIN RESPONSE FACTOR 21)
Module size 38 genes
NF 0.83
%ile 95.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7083.51.00At1g34410840344ARF21 (AUXIN RESPONSE FACTOR 21)F:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.H.G.S.X.
0.9296.00.86At1g10190837557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.9195.60.75At5g46950834741invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9095.10.81At5g39260833922ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.8994.60.84At1g56620842117pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8994.60.82At1g09370837459enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8994.60.74At4g29285829050LCR24 (Low-molecular-weight cysteine-rich 24)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.H.G.S.X.
0.8894.00.86At5g14860831338transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.H.G.S.X.
0.8894.00.83At3g57270824894BG1 (BETA-1,3-GLUCANASE 1)encodes a member of glycosyl hydrolase family 17O.I.H.G.S.X.
0.8894.00.66At5g39280833924ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.8894.00.89At3g17140820971invertase inhibitor-relatedF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8793.50.62At5g54220835510-Encodes a defensin-like (DEFL) family protein.O.I.H.G.S.X.
0.8693.10.65At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.H.G.S.X.
0.8693.10.67At2g06090815164self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8693.10.90At4g39650830119GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.O.I.H.G.S.X.
0.8592.40.63At3g17150820972enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8592.40.90At4g20800827828FAD-binding domain-containing proteinF:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.H.G.S.X.
0.8592.40.83At5g25410832613unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.H.G.S.X.
0.8592.40.69At5g59110836029subtilisin-like serine protease-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.8491.90.59At2g02515814781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8391.40.61At3g24510822044-Encodes a defensin-like (DEFL) family protein.O.I.H.G.S.X.
0.8391.40.77At5g06500830538AGL96 (AGAMOUS-LIKE 96)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.8391.40.64At2g30810817632gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.H.G.S.X.
0.8290.90.62At4g30070829130LCR59 (Low-molecular-weight cysteine-rich 59)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.H.G.S.X.
0.8290.90.65At1g13680837929phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.S.X.
0.8290.90.86At5g35900833576LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8290.90.70At2g32770817838purple acid phosphatase (PAP13)F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PMOFBAO.I.H.G.S.X.
0.8190.40.60At2g44540819062AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.H.G.S.X.
0.8190.40.61At5g46810834725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO.I.H.G.S.X.
0.8089.80.71At1g64830842791aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.8089.80.67At2g30090817560GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MPBAOO.I.H.G.S.X.
0.7888.60.58At4g23080828407unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.7788.00.70At4g33830829525catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPFO.I.H.G.S.X.
0.7788.00.81At3g46840823837subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.H.G.S.X.
0.7788.00.68At1g22015838806DD46F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOFO.I.H.G.S.X.
0.7687.40.58At2g37720818349unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.7687.40.60At3g05460819711sporozoite surface protein-relatedF:unknown;P:unknown;C:endomembrane system;MOBPO.I.H.G.S.X.
0.6882.20.62At5g19270832047unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.299.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
65.699.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
63.999.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
47.199.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.499.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.599.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.899.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.399.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.899.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.099.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.599.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.299.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.899.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.999.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.899.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
15.499.5GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.899.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.099.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.199.2E-MEXP-1138-raw-cel-1432773162
10.099.2GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.399.1GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.299.1E-MEXP-1138-raw-cel-1432773194
9.299.1GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.299.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.999.0E-MEXP-1138-raw-cel-1432773226
8.799.0E-MEXP-1138-raw-cel-1432773354

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0632GO:0009831The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0552GO:0009828The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0481GO:0006751The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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