Co-expression analysis

Gene ID At1g34400
Gene name unknown protein
Module size 42 genes
NF 0.45
%ile 63.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8491.91.00At1g34400840342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7385.50.88At2g14010815885transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.87At4g084203770258transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.87At3g42970823353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.87At2g18530816368protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVAO.I.H.G.S.X.
0.5773.80.87At3g55650824731pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFAO.I.H.G.S.X.
0.5673.00.86At3g20690821616F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.88At4g038503770317transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.90At3g42730823306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.86At1g09220837442pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cytosolic ribosome;POMFO.I.H.G.S.X.
0.5469.50.86At1g47680841178unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5368.60.89At5g35010833446transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.87At5g348403771203transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.88At2g054703768434transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.86At1g35614840459unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4963.50.87At3g320003769220transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.90At4g080003769934transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.88At2g061603767898transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.89At2g116503767819transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.87At2g108803768614transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.87At1g46336841111unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.88At4g073603770409transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.88At3g43470823432nucleic acid binding / zinc ion bindingF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.86At3g429003769508transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.86At1g129353766713transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.87At2g19420816461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.88At4g08130826356transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.86At2g22940816825-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.70.86At2g07701815376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.70.86At1g33860840283unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknownO.I.H.G.S.X.
0.3643.60.87At5g34970833442transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.88At2g077303768192transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.88At3g42160823189pectinesterase-relatedF:pectinesterase activity;P:cell wall modification;C:cell wall;PO.I.H.G.S.X.
0.3541.60.87At5g351403771250transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.86At5g282003770776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.88At2g101403767931transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.87At2g076853768050transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.87At2g116803767822transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.88At1g35820840484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.30.86At5g26890832747unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.2726.20.86At2g06230815179transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.86At1g44222--O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.799.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.699.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.399.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.199.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.999.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.199.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.899.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.399.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.799.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.099.6GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.799.6GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.299.6GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.099.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.599.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.699.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.699.5GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.099.5E-MEXP-1474-raw-cel-1593932929
17.799.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.799.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.999.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.499.5E-MEXP-1474-raw-cel-1593932801
15.199.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.799.4E-MEXP-1474-raw-cel-1593932865
14.599.4GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.799.4E-ATMX-35-raw-cel-1574334848
13.499.4GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.399.4GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.699.3GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.399.3GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.999.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.799.3GSM226541L11SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.499.3GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.399.3E-ATMX-1-raw-cel-1112746095
11.199.2GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.099.2GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.899.2GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.799.2E-ATMX-35-raw-cel-1574334864
10.499.2GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
10.199.2GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.999.1GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.899.1GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.699.1E-ATMX-35-raw-cel-1574334880
9.699.1GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.099.1GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.799.0GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.699.0GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0231GO:0006096The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.Link to AmiGO
0.0191GO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.019100620Pyruvate metabolismLink to KEGG PATHWAY
0.017100710Carbon fixation in photosynthetic organismsLink to KEGG PATHWAY
0.016100010Glycolysis / GluconeogenesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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