Co-expression analysis

Gene ID At1g34110
Gene name leucine-rich repeat transmembrane protein kinase, putative
Module size 6 genes
NF 0.01
%ile 0.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g34110840310leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.3338.10.78At3g08910820040DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.H.G.S.X.
0.1811.40.79At1g01950839306armadillo/beta-catenin repeat family protein / kinesin motor family proteinEncodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.O.I.H.G.S.X.
0.010.20.79At4g27130828821eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVBO.I.H.G.S.X.
-0.00.79At3g16857820940ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.H.G.S.X.
-0.00.78At2g41760818775unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.499.8GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
26.599.7GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.Link to GEO
21.799.6E-MEXP-1797-raw-cel-1669768057
20.999.6E-ATMX-31-raw-cel-1516947916
20.899.6GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.Link to GEO
20.199.6E-MEXP-1797-raw-cel-1669768030
17.899.5E-MEXP-1797-raw-cel-1669768039
17.799.5E-MEXP-1797-raw-cel-1669767940
16.399.5E-MEXP-1797-raw-cel-1669767976
16.199.5E-MEXP-1797-raw-cel-1669768066
15.899.5E-MEXP-1797-raw-cel-1669767967
15.399.4E-MEXP-1797-raw-cel-1669767949
14.999.4E-MEXP-1112-raw-cel-1590665845
14.899.4E-MEXP-1797-raw-cel-1669768048
14.799.4E-MEXP-1112-raw-cel-1590665429
14.499.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.499.4GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.399.4E-MEXP-1797-raw-cel-1669767958
13.799.4E-ATMX-31-raw-cel-1516947899
13.699.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.699.4GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.699.4GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.599.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.499.4E-MEXP-1797-raw-cel-1669767985
13.299.4GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.199.4E-ATMX-31-raw-cel-1516947882
13.199.4GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.099.4GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.999.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.799.3GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.799.3GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.499.3GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.399.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.299.3E-MEXP-1112-raw-cel-1590665325
12.199.3E-MEXP-1112-raw-cel-1590665273
12.099.3GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.899.3E-MEXP-1797-raw-cel-1669768075
11.699.3GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3E-MEXP-1112-raw-cel-1590665793
11.399.3E-MEXP-1797-raw-cel-1669768084
11.199.2GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.199.2GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.999.2GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.799.2E-MEXP-1797-raw-cel-1669768012
10.699.2E-MEXP-1112-raw-cel-1590665377
10.699.2GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.399.2E-MEXP-1797-raw-cel-1669767994
10.299.2E-MEXP-1112-raw-cel-1590665689
9.899.1E-ATMX-30-raw-cel-1513696906
9.599.1E-MEXP-791-raw-cel-1122937569
9.099.1E-MEXP-1112-raw-cel-1590665741
9.099.1E-MEXP-1797-raw-cel-1669768021
8.699.0E-MEXP-791-raw-cel-1122937533

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0031537Any process that modulates the frequency, rate or extent of chemical reactions and pathways involving anthocyanins.Link to AmiGO
0.1251GO:0010380Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.Link to AmiGO
0.1051GO:0080022The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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