CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g33050

Gene name unknown protein

Module size 28 genes

NF 0.53

%ile 74.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.63 78.1 1.00 At1g33050 840200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP O.I. H.G. S.X.
0.69 82.9 0.87 At5g06560 830544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.65 79.6 0.86 At1g15880 838158 GOS11 (golgi snare 11) Golgi SNARE 11 protein (GOS11) O.I. H.G. S.X.
0.65 79.6 0.85 At4g35790 829733 ATPLDDELTA Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. O.I. H.G. S.X.
0.64 78.9 0.83 At5g45710 834610 RHA1 (ROOT HANDEDNESS 1) member of Heat Stress Transcription Factor (Hsf) family O.I. H.G. S.X.
0.64 78.9 0.82 At2g01450 814673 ATMPK17 member of MAP Kinase O.I. H.G. S.X.
0.64 78.9 0.86 At1g28960 839773 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPA O.I. H.G. S.X.
0.63 78.1 0.88 At5g22000 832260 RHF2A (RING-H2 GROUP F2A) encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. O.I. H.G. S.X.
0.63 78.1 0.85 At5g54310 835519 AGD5 (ARF-GAP domain 5) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. O.I. H.G. S.X.
0.62 77.3 0.84 At1g19110 838494 inter-alpha-trypsin inhibitor heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA O.I. H.G. S.X.
0.58 73.8 0.86 At1g33250 840219 fringe-related protein F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO O.I. H.G. S.X.
0.58 73.8 0.81 At4g16110 827297 ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) Encodes a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Acts in concert with other type-B ARRs in the cytokinin signaling pathway. AHK3 mediates cytokinin-induced phosphorylation of ARR2 on the Asp-80 residue. This phosphorylation plays a positive role of ARR2 in cytokinin-mediated control of leaf longevity. O.I. H.G. S.X.
0.57 73.8 0.86 At2g18280 816344 AtTLP2 (TUBBY LIKE PROTEIN 2) Member of TLP family O.I. H.G. S.X.
0.56 73.0 0.87 At2g31350 817693 GLX2-5 (GLYOXALASE 2-5) Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II). O.I. H.G. S.X.
0.56 73.0 0.84 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 0.85 At1g71410 843482 protein kinase family protein F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVA O.I. H.G. S.X.
0.52 67.4 0.84 At4g00720 828023 ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA O.I. H.G. S.X.
0.50 65.3 0.82 At5g01800 831924 saposin B domain-containing protein F:molecular_function unknown;P:N-terminal protein myristoylation, lipid metabolic process;C:endomembrane system;MOP O.I. H.G. S.X.
0.49 63.5 0.83 At4g13980 827033 AT-HSFA5 member of Heat Stress Transcription Factor (Hsf) family O.I. H.G. S.X.
0.48 62.5 0.84 At2g31800 817737 ankyrin protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA O.I. H.G. S.X.
0.47 61.2 0.84 At1g04985 839352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.44 57.2 0.84 At5g23670 832432 LCB2 Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. O.I. H.G. S.X.
0.41 52.4 0.82 At4g19110 827649 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. H.G. S.X.
0.41 52.4 0.85 At5g64920 836616 CIP8 (COP1-INTERACTING PROTEIN 8) Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. O.I. H.G. S.X.
0.40 50.8 0.83 At4g38260 829983 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAV O.I. H.G. S.X.
0.39 48.4 0.84 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA O.I. H.G. S.X.
0.38 46.7 0.81 At1g15920 838162 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF O.I. H.G. S.X.
0.34 39.8 0.82 At1g65430 842854 zinc finger protein-related F:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFV O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.63	78.1	1.00	At1g33050	840200	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP	O.I.	H.G.	S.X.
0.69	82.9	0.87	At5g06560	830544	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA	O.I.	H.G.	S.X.
0.65	79.6	0.86	At1g15880	838158	GOS11 (golgi snare 11)	Golgi SNARE 11 protein (GOS11)	O.I.	H.G.	S.X.
0.65	79.6	0.85	At4g35790	829733	ATPLDDELTA	Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.	O.I.	H.G.	S.X.
0.64	78.9	0.83	At5g45710	834610	RHA1 (ROOT HANDEDNESS 1)	member of Heat Stress Transcription Factor (Hsf) family	O.I.	H.G.	S.X.
0.64	78.9	0.82	At2g01450	814673	ATMPK17	member of MAP Kinase	O.I.	H.G.	S.X.
0.64	78.9	0.86	At1g28960	839773	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPA	O.I.	H.G.	S.X.
0.63	78.1	0.88	At5g22000	832260	RHF2A (RING-H2 GROUP F2A)	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	O.I.	H.G.	S.X.
0.63	78.1	0.85	At5g54310	835519	AGD5 (ARF-GAP domain 5)	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	O.I.	H.G.	S.X.
0.62	77.3	0.84	At1g19110	838494	inter-alpha-trypsin inhibitor heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA	O.I.	H.G.	S.X.
0.58	73.8	0.86	At1g33250	840219	fringe-related protein	F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO	O.I.	H.G.	S.X.
0.58	73.8	0.81	At4g16110	827297	ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2)	Encodes a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Acts in concert with other type-B ARRs in the cytokinin signaling pathway. AHK3 mediates cytokinin-induced phosphorylation of ARR2 on the Asp-80 residue. This phosphorylation plays a positive role of ARR2 in cytokinin-mediated control of leaf longevity.	O.I.	H.G.	S.X.
0.57	73.8	0.86	At2g18280	816344	AtTLP2 (TUBBY LIKE PROTEIN 2)	Member of TLP family	O.I.	H.G.	S.X.
0.56	73.0	0.87	At2g31350	817693	GLX2-5 (GLYOXALASE 2-5)	Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).	O.I.	H.G.	S.X.
0.56	73.0	0.84	At4g01960	828190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	0.85	At1g71410	843482	protein kinase family protein	F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVA	O.I.	H.G.	S.X.
0.52	67.4	0.84	At4g00720	828023	ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA	O.I.	H.G.	S.X.
0.50	65.3	0.82	At5g01800	831924	saposin B domain-containing protein	F:molecular_function unknown;P:N-terminal protein myristoylation, lipid metabolic process;C:endomembrane system;MOP	O.I.	H.G.	S.X.
0.49	63.5	0.83	At4g13980	827033	AT-HSFA5	member of Heat Stress Transcription Factor (Hsf) family	O.I.	H.G.	S.X.
0.48	62.5	0.84	At2g31800	817737	ankyrin protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA	O.I.	H.G.	S.X.
0.47	61.2	0.84	At1g04985	839352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	0.84	At5g23670	832432	LCB2	Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.	O.I.	H.G.	S.X.
0.41	52.4	0.82	At4g19110	827649	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	H.G.	S.X.
0.41	52.4	0.85	At5g64920	836616	CIP8 (COP1-INTERACTING PROTEIN 8)	Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.	O.I.	H.G.	S.X.
0.40	50.8	0.83	At4g38260	829983	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAV	O.I.	H.G.	S.X.
0.39	48.4	0.84	At5g58950	836012	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA	O.I.	H.G.	S.X.
0.38	46.7	0.81	At1g15920	838162	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF	O.I.	H.G.	S.X.
0.34	39.8	0.82	At1g65430	842854	zinc finger protein-related	F:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFV	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.3 99.8 E-MEXP-509-raw-cel-829148561
33.4 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.0 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.5 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.2 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.1 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.8 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.1 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.6 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.9 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.8 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.7 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.3 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.5 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.8 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.5 99.6 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
20.1 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.3 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.4 99.5 E-MEXP-509-raw-cel-829148597
17.5 99.5 GSM158702 HY213-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
17.4 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.0 99.5 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
16.0 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.8 99.5 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.5 99.5 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.2 99.4 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4 99.4 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
14.0 99.4 E-MEXP-509-raw-cel-829148201
13.6 99.4 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.6 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.1 99.4 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
13.1 99.4 GSM106914 opr3_JA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.6 99.3 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.3 99.3 E-MEXP-807-raw-cel-1173273116
11.9 99.3 E-MEXP-509-raw-cel-829148525
11.8 99.3 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
11.4 99.3 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.2 99.2 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
11.0 99.2 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
10.9 99.2 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
10.7 99.2 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7 99.2 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.6 99.2 E-MEXP-509-raw-cel-829148877
10.6 99.2 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.3 99.2 E-MEXP-509-raw-cel-829148456
10.1 99.2 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.9 99.1 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.9 99.1 GSM106910 opr3_JA_2 hrs_rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.8 99.1 E-MEXP-509-raw-cel-829148313
9.7 99.1 E-MEXP-509-raw-cel-829148090
9.5 99.1 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.4 99.1 GSM106911 opr2_JA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.4 99.1 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.3 99.1 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.0 99.1 E-MEXP-509-raw-cel-829148420
8.8 99.0 E-MEXP-509-raw-cel-829148348
8.7 99.0 E-MEXP-509-raw-cel-829148276

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
40.3	99.8	E-MEXP-509-raw-cel-829148561
33.4	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.0	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
27.5	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.2	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.1	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.8	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.1	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.6	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.9	99.6	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.8	99.6	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.7	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.3	99.6	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.5	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.8	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.5	99.6	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
20.1	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.3	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.4	99.5	E-MEXP-509-raw-cel-829148597
17.5	99.5	GSM158702	HY213-ESTRADIOL-REP1	GSE6954	Identification of AGL24 downstream genes by using XVE inducible system
17.4	99.5	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.0	99.5	GSM106913	opr3_JA_8 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
16.0	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.8	99.5	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.5	99.5	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.2	99.4	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4	99.4	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
14.0	99.4	E-MEXP-509-raw-cel-829148201
13.6	99.4	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.6	99.4	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.1	99.4	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
13.1	99.4	GSM106914	opr3_JA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.6	99.3	GSM106912	opr3_JA 8hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.3	99.3	E-MEXP-807-raw-cel-1173273116
11.9	99.3	E-MEXP-509-raw-cel-829148525
11.8	99.3	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
11.4	99.3	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.2	99.2	GSM133117	RIKEN-YAMAUCHI1A	GSE5687	AtGenExpress: Different temperature treatment of seeds
11.0	99.2	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
10.9	99.2	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
10.7	99.2	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7	99.2	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.6	99.2	E-MEXP-509-raw-cel-829148877
10.6	99.2	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.3	99.2	E-MEXP-509-raw-cel-829148456
10.1	99.2	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.9	99.1	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
9.9	99.1	GSM106910	opr3_JA_2 hrs_rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.8	99.1	E-MEXP-509-raw-cel-829148313
9.7	99.1	E-MEXP-509-raw-cel-829148090
9.5	99.1	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.4	99.1	GSM106911	opr2_JA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.4	99.1	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.3	99.1	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.0	99.1	E-MEXP-509-raw-cel-829148420
8.8	99.0	E-MEXP-509-raw-cel-829148348
8.7	99.0	E-MEXP-509-raw-cel-829148276

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.069 1 GO:0032857 Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP.
0.069 1 GO:0046473 The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.
0.069 1 GO:0046512 The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.

SF	Genes	GO ID	Process Name
0.069	1	GO:0032857	Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP.
0.069	1	GO:0046473	The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.
0.069	1	GO:0046512	The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.053 1 00600 Sphingolipid metabolism
0.026 1 04130 SNARE interactions in vesicular transport
0.022 1 04144 Endocytosis

SF	Genes	KEGG ID	Pathway name
0.053	1	00600	Sphingolipid metabolism
0.026	1	04130	SNARE interactions in vesicular transport
0.022	1	04144	Endocytosis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g33050
Gene name	unknown protein
Module size	28 genes
NF	0.53
%ile	74.0

Co-expression analysis

Gene ID At1g33050 Gene name unknown protein Module size 28 genes NF 0.53 %ile 74.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.053100600Sphingolipid metabolism0.026104130SNARE interactions in vesicular transport0.022104144Endocytosis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g33050

Gene name unknown protein

Module size 28 genes

NF 0.53

%ile 74.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.053 1 00600 Sphingolipid metabolism
0.026 1 04130 SNARE interactions in vesicular transport
0.022 1 04144 Endocytosis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays