Co-expression analysis

Gene ID At1g32950
Gene name subtilase family protein
Module size 74 genes
NF 0.39
%ile 53.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g32950840189subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFMO.I.H.G.S.X.
0.6781.60.76At4g14280827069bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6075.70.75At5g24900832559CYP714A2member of CYP714AO.I.H.G.S.X.
0.5974.70.76At5g06490830537zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.5974.70.76At5g02000831865unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.76At2g21110816646disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.H.G.S.X.
0.5873.80.80At5g54950835586aconitate hydratase-related / citrate hydro-lyase-related / aconitase-relatedF:molecular_function unknown;P:metabolic process;C:cellular_component unknown;MPOBO.I.H.G.S.X.
0.5873.80.78At3g57960824965emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.75At2g25360817075zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.5673.00.78At2g26420817182PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3)Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.O.I.H.G.S.X.
0.5469.50.76At5g15060831358-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.76At3g29380822598transcription factor IIB (TFIIB) family proteinF:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:response to cadmium ion;C:transcription factor complex, nucleus;OAMFPVO.I.H.G.S.X.
0.5368.60.76At5g50270835092F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.5368.60.76At3g578203769732-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.77At1g46840841118F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PO.I.H.G.S.X.
0.5166.30.76At3g45110823647unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.76At1g475203767382transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.77At1g43680840955-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.77At5g60320836154lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.4963.50.77At4g11590826764F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4963.50.75At4g22650828361-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4963.50.78At5g45120834548aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOO.I.H.G.S.X.
0.4862.50.75At1g74620843801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.4862.50.75At3g13228820519zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVO.I.H.G.S.X.
0.4862.50.77At4g22940828393protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.H.G.S.X.
0.4761.20.76At2g39160818501unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.76At5g03000831712kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPBOVAFO.I.H.G.S.X.
0.4761.20.79At1g26360839178MES13 (METHYL ESTERASE 13)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.H.G.S.X.
0.4659.80.76At1g80590844398WRKY66member of WRKY Transcription Factor; Group IIIO.I.H.G.S.X.
0.4659.80.77At5g11180830988ATGLR2.6member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.4457.20.75At2g32310817792-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.4457.20.76At4g25800828685calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.4457.20.75At3g20475821593MSH5 (MUTS-HOMOLOGUE 5)Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.O.I.H.G.S.X.
0.4457.20.75At3g42600823272transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.75At2g23945816927chloroplast nucleoid DNA-binding protein-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMOFO.I.H.G.S.X.
0.4253.90.77At1g02570839485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.40.75At3g58280824997-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.4152.40.75At3g31430822909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4050.80.76At5g28790832995transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.78At5g50970835170WD-40 repeat family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPO.I.H.G.S.X.
0.3948.40.76At3g14710820699F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.75At3g62500825424-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.75At3g45460823686zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3846.70.76At1g22720838878wall-associated kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFVBO.I.H.G.S.X.
0.3846.70.77At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAO.I.H.G.S.X.
0.3846.70.76At5g58890836006AGL82 (AGAMOUS-LIKE 82)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.3846.70.75At3g50420824206pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.3745.00.77At3g22770821848F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3745.00.75At3g45390823677lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFO.I.H.G.S.X.
0.3643.60.75At3g55780824744glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.3643.60.76At2g044903768047transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3541.60.75At3g18460821375unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.3541.60.75At1g60930842384ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B)AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination.O.I.H.G.S.X.
0.3541.60.75At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.75At5g27680832830RECQSIM (Arabidopsis RecQ helicase sim)DNA helicaseO.I.H.G.S.X.
0.3338.10.75At1g10710837614-Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene.O.I.H.G.S.X.
0.3338.10.75At5g56770835779unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3338.10.75At3g16710820923-F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.3235.70.76At3g46760823829protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.3235.70.76At4g19190827658zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.3133.80.76At5g52800835357DNA primaseF:DNA primase activity;P:DNA replication;C:cellular_component unknown;MOPVO.I.H.G.S.X.
0.3133.80.75At5g23770832442RNA bindingF:RNA binding;P:unknown;C:unknown;POBFMO.I.H.G.S.X.
0.3133.80.75At1g17240838295AtRLP2 (Receptor Like Protein 2)F:protein binding, protein kinase activity;P:signal transduction;C:unknown;PMOBFAVO.I.H.G.S.X.
0.2830.30.75At1g64210842726leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVAO.I.H.G.S.X.
0.2726.20.76At3g46340823779leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.2726.20.76At5g46140834656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2420.70.78At3g13682820577LDL2 (LSD1-LIKE2)Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.O.I.H.G.S.X.
0.2319.30.75At5g49410835001unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2319.30.76At4g05260825874ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POO.I.H.G.S.X.
0.2014.40.75At1g74630843802pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBO.I.H.G.S.X.
0.1710.20.77At3g20730821621pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:endomembrane system;POMFBO.I.H.G.S.X.
0.168.80.75At2g38100818388proton-dependent oligopeptide transport (POT) family proteinF:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOFO.I.H.G.S.X.
0.146.80.75At3g28640822494pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFO.I.H.G.S.X.
0.124.90.75At4g19220827662pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
52.199.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.599.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.599.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.299.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.799.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.799.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.299.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.099.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.699.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.199.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.999.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.499.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.399.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
29.099.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.699.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.599.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.399.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.099.6GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
19.599.6GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
16.299.5GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
16.199.5GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.899.4GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.399.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.399.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.899.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.299.2GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.099.2GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.199.1GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.099.1GSM142730CH001_ATH1_A009-Hampt-wsc_repeatGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
8.899.0GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.699.0GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0402GO:0006310Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.Link to AmiGO
0.0251GO:0051026The cell cycle process whereby a connection between chromatids forms, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids.Link to AmiGO
0.0251GO:0051568The modification of histone H3 by addition of a methyl group to lysine at position 4 of the histone.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.019103022Basal transcription factorsLink to KEGG PATHWAY
0.018100562Inositol phosphate metabolismLink to KEGG PATHWAY
0.018104070Phosphatidylinositol signaling systemLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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