Co-expression analysis

Gene ID At1g32180
Gene name ATCSLD6
Module size 70 genes
NF 0.59
%ile 80.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g32180840110ATCSLD6encodes a gene similar to cellulose synthaseO.I.H.G.S.X.
0.7788.00.86At2g06230815179transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.87At3g55930824759RNA splicing factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.H.G.S.X.
0.7687.40.86At3g13890820602ATMYB26 (MYB DOMAIN PROTEIN 26)Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants.O.I.H.G.S.X.
0.7586.90.86At1g338173766904transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.87At2g29610817511-pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domainO.I.H.G.S.X.
0.7385.50.86At1g364403767000transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.88At2g056603768558transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.87At2g076823768187transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.87At1g37020840613Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFAO.I.H.G.S.X.
0.7284.80.86At4g044403769954transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.86At1g437453767315transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.87At5g54480835536unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVAO.I.H.G.S.X.
0.7184.20.87At2g062203768629transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.7083.50.86At1g43320840933unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7083.50.86At2g073953768424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.86At2g07673815345unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7083.50.86At2g047603767977transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.85At2g111683768076transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.86At3g30840822861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6982.90.86At3g30845822868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6982.90.87At1g35110840395transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.86At1g35820840484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.87At2g07672815344unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.86At2g07770815424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.87At2g143203768070transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.86At2g077303768192transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.86At3g42160823189pectinesterase-relatedF:pectinesterase activity;P:cell wall modification;C:cell wall;PO.I.H.G.S.X.
0.6680.10.86At3g29660822644transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.86At2g07692815368unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.60.85At3g42130823185glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVO.I.H.G.S.X.
0.6478.90.85At2g076203767903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.86At1g44222--O.I.H.G.S.X.
0.6478.90.86At1g360353766971transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.85At3g30660822783transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.85At4g08130826356transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.86At3g296503769022transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.86At2g07701815376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6176.70.85At2g116803767822transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.85At1g424103767250transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.86At1g43660840950transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.87At3g32120822975unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.86At5g353403771268transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.87At2g29770817527kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAO.I.H.G.S.X.
0.5974.70.86At1g29620839839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.86At5g54330835521unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.85At4g32375829372glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;MPBOFVAO.I.H.G.S.X.
0.5873.80.85At2g116903767823transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.85At3g29640822637transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.86At2g127103768564transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.85At2g22940816825-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.85At1g778203767718transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.85At2g150603767889transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.87At3g430603769525transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.86At2g106503767860transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.85At1g36020840505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4963.50.85At2g115903768652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.85At2g077363768150transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.86At2g157003767804transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.86At1g301503766846transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.86At2g130203768601transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.86At2g10390815498transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.86At1g362703766988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.85At2g061503767897transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.85At3g430203769521transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3745.00.85At1g338133766903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.86At1g433003767304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.85At1g357603766961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.85At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.2830.30.85At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
52.599.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.599.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.099.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.599.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.199.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.699.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.899.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.299.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.899.7GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
29.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.299.7GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
24.199.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.799.6GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
22.199.6GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
20.299.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.099.5GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
14.599.4GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.599.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.199.4GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.099.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.299.3E-MEXP-807-raw-cel-1173273060
12.199.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.999.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.999.3GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
11.399.3GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.099.2GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.999.2E-MEXP-1474-raw-cel-1593932929
10.799.2GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.799.2GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
10.599.2GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.799.1E-MEXP-807-raw-cel-1173273116
9.499.1E-MEXP-807-raw-cel-1173273170
9.399.1E-MEXP-1474-raw-cel-1593932801
9.399.1E-MEXP-807-raw-cel-1173273223
9.299.1GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.299.1GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
9.299.1GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.199.1GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.099.1E-MEXP-1474-raw-cel-1593932865
8.999.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
8.799.0GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
8.699.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.699.0GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0251GO:0009901The dehiscence of an anther to release the pollen grains contained within it.Link to AmiGO
0.0231GO:0009834The chemical reactions and pathways resulting in the formation of inextensible cellulose and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0221GO:0000271The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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