Co-expression analysis

Gene ID At1g30110
Gene name ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)
Module size 25 genes
NF 0.54
%ile 75.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6277.31.00At1g30110839890ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)F:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:diadenosine tetraphosphate catabolic process;C:cellular_component unknown;BOPMAO.I.H.G.S.X.
0.7083.50.81At2g29995817550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6882.20.78At5g05400830422disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFAO.I.H.G.S.X.
0.6882.20.81At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.6478.90.81At1g31885840079transporterF:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAVO.I.H.G.S.X.
0.6378.10.77At1g78000844135SULTR1Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.O.I.H.G.S.X.
0.6176.70.77At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.H.G.S.X.
0.6075.70.81At3g18560821387unknown proteinF:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.5974.70.79At1g49310841354unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5873.80.80At1g07560837270leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.5673.00.76At1g68940843228armadillo/beta-catenin repeat protein-related / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFVO.I.H.G.S.X.
0.5570.60.79At2g42060818806CHP-rich zinc finger protein, putativeF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO.I.H.G.S.X.
0.5368.60.77At1g34670840371AtMYB93 (myb domain protein 93)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.5166.30.76At2g28990817448leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.5166.30.76At5g43350834353PHT1Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.O.I.H.G.S.X.
0.5065.30.78At1g05700837077leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.5065.30.77At1g73270843661scpl6 (serine carboxypeptidase-like 6)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.H.G.S.X.
0.4963.50.77At3g45410823679lectin protein kinase family proteinencodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.O.I.H.G.S.X.
0.4761.20.78At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOO.I.H.G.S.X.
0.4659.80.77At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.4659.80.80At5g25160832587ZFP3 (ZINC FINGER PROTEIN 3)Encodes a zinc finger protein containing only a single zinc finger.O.I.H.G.S.X.
0.4457.20.86At1g72300843562leucine-rich repeat transmembrane protein kinase, putativeEncodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.O.I.H.G.S.X.
0.4457.20.77At4g15740827252C2 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.3948.40.78At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.H.G.S.X.
0.3846.70.78At5g40510834049-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
49.599.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.899.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.299.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.699.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.699.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.999.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.699.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.599.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.199.6GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
21.899.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.899.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.699.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.199.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.999.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.599.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.399.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.099.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.999.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.899.5GSM231203chl1 at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
17.599.5GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
17.499.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.099.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.999.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.899.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.799.4GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.299.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.899.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.799.3GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.799.3GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.699.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.599.3GSM231196wild-type at T0.5, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
12.399.3E-MEXP-1094-raw-cel-1379507313
11.999.3GSM231197wild-type at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
11.599.3E-ATMX-35-raw-cel-1574334864
10.799.2GSM231202chl1 at T0.5, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
10.499.2GSM157305Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
10.399.2E-ATMX-35-raw-cel-1574334880
10.399.2E-MEXP-1094-raw-cel-1379507273
10.299.2GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
9.099.1GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0771GO:0015967The chemical reactions and pathways resulting in the breakdown of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached.Link to AmiGO
0.0671GO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.Link to AmiGO
0.0531GO:0009970A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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