Co-expression analysis

Gene ID At1g27430
Gene name GYF domain-containing protein
Module size 80 genes
NF 0.28
%ile 32.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g27430839633GYF domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.H.G.S.X.
0.5570.60.89At4g24680828570-F:molecular_function unknown;P:unknown;C:unknown;OMFBPVAO.I.H.G.S.X.
0.5065.30.86At5g27650832827PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.4659.80.89At5g37370833711ATSRL1encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.O.I.H.G.S.X.
0.4659.80.89At5g58040835916ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V])Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.O.I.H.G.S.X.
0.4558.30.88At2g35330818100protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.4457.20.87At4g18300827556eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity;P:biosynthetic process, regulation of translational initiation;C:unknown;BOMFAPO.I.H.G.S.X.
0.4253.90.88At3g63070825482PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.4152.40.88At5g13540--O.I.H.G.S.X.
0.4152.40.87At5g20610832183unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAVO.I.H.G.S.X.
0.4152.40.88At1g61000842392-F:molecular_function unknown;P:mitosis;C:plasma membrane;MOBFPAVO.I.H.G.S.X.
0.4152.40.89At2g30800817631HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.O.I.H.G.S.X.
0.4050.80.87At5g43130834330TAF4 (TBP-ASSOCIATED FACTOR 4)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVAO.I.H.G.S.X.
0.3846.70.87At4g16280827323FCAInvolved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing.O.I.H.G.S.X.
0.3846.70.87At1g56290842082CwfJ-like family proteinF:unknown;P:unknown;C:cellular_component unknown;MOFPBAVO.I.H.G.S.X.
0.3846.70.87At5g65540836680unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.H.G.S.X.
0.3745.00.87At2g46020819210transcription regulatory protein SNF2, putativeEncodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.O.I.H.G.S.X.
0.3745.00.88At3g45830823726unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.
0.3643.60.88At3g23900821973RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.3643.60.88At4g10070826598KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVAO.I.H.G.S.X.
0.3541.60.86At5g41150834117UVH1 (ULTRAVIOLET HYPERSENSITIVE 1)Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteinsO.I.H.G.S.X.
0.3541.60.86At1g21610838762wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.3541.60.87At3g27530822375GC6 (golgin candidate 6)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.O.I.H.G.S.X.
0.3541.60.87At1g61690842466phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;MOFBPAVO.I.H.G.S.X.
0.3541.60.88At2g17030816206F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.87At5g42400834246SDG25 (SET DOMAIN PROTEIN 25)F:unknown;P:unknown;C:unknown;MOPFBAVO.I.H.G.S.X.
0.3439.80.86At1g77220844058unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.H.G.S.X.
0.3439.80.88At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBO.I.H.G.S.X.
0.3439.80.88At1g24706839081unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.3439.80.88At2g38950818480transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;MFPOO.I.H.G.S.X.
0.3439.80.87At3g62240825397zinc finger (C2H2 type) family proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPVO.I.H.G.S.X.
0.3235.70.88At4g32160829348phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAVO.I.H.G.S.X.
0.3235.70.88At1g61040842395VIP5 (vernalization independence 5)Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.O.I.H.G.S.X.
0.3235.70.88At5g52530835329dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.3133.80.87At1g64960842804bindingF:binding;P:unknown;C:mitochondrion;MOPO.I.H.G.S.X.
0.3133.80.87At5g66030836733ATGRIPInvolved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.O.I.H.G.S.X.
0.3133.80.87At4g12640826877RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBAO.I.H.G.S.X.
0.3032.10.86At2g24530816989unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.2930.30.87At1g10390837579nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.H.G.S.X.
0.2830.30.87At5g15270831379KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.2830.30.87At5g55600835654agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing proteinF:RNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.2830.30.86At5g25520832627transcription elongation factor-relatedF:unknown;P:transcription;C:unknown;MOFBPVO.I.H.G.S.X.
0.2726.20.87At5g65180836642-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAVO.I.H.G.S.X.
0.2726.20.87At1g17070838277D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;MOPFAVO.I.H.G.S.X.
0.2624.40.88At2g17410816247ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MOBFPVAO.I.H.G.S.X.
0.2624.40.87At1g22860838891unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.2522.60.87At4g31200829247SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVAO.I.H.G.S.X.
0.2522.60.87At5g42560834262abscisic acid-responsive HVA22 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.H.G.S.X.
0.2420.70.87At3g25840822178protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus;MOFPBVAO.I.H.G.S.X.
0.2420.70.86At2g44950819104HUB1 (HISTONE MONO-UBIQUITINATION 1)The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.O.I.H.G.S.X.
0.2420.70.88At2g20310816550RIN13 (RPM1 INTERACTING PROTEIN 13)Encodes RPM1 Interacting Protein 13 (RIN13), a resistance protein interactor shown to positively enhance resistance function of RPM1.O.I.H.G.S.X.
0.2420.70.87At4g14920827150DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.H.G.S.X.
0.2319.30.86At1g64990842807GTG1 (GPCR-TYPE G PROTEIN 1)Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG1 binds to GPA1, the alpha subunit of the heterotrimeric G protein. GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG1 and may act to down-regulate GTG1 binding to ABA. GTG1 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG1 transcript levels do not appear to change in response to ABA or abiotic stresses.O.I.H.G.S.X.
0.2319.30.87At4g02640828219BZO2H1Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10. AtbZIP10 shuttles between the nucleus and the cytoplasm. It binds consensus G- and C-box DNA sequences. AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.O.I.H.G.S.X.
0.2319.30.87At4g11860826793-F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPBO.I.H.G.S.X.
0.2319.30.86At5g24350832505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.2217.50.86At5g40520834050unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.H.G.S.X.
0.2217.50.86At3g55320824698PGP20 (P-GLYCOPROTEIN 20)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPVO.I.H.G.S.X.
0.2217.50.86At5g63610836481CDKEsignificant sequence similarity to plant and animal cyclin-dependent protein kinases, and was classified as an E-type CDK with a SPTAIRE cyclin binding motif in the kinase domain.O.I.H.G.S.X.
0.2217.50.86At1g28060839699small nuclear ribonucleoprotein family protein / snRNP family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.2115.80.87At3g06340819808DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2115.80.87At1g26830839226ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.O.I.H.G.S.X.
0.2014.40.86At1g17210838292zinc ion bindingF:zinc ion binding;P:unknown;C:cytosol, nucleus, phragmoplast;OMPFBAO.I.H.G.S.X.
0.2014.40.87At4g00450827954CRP (CRYPTIC PRECOCIOUS)A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.O.I.H.G.S.X.
0.2014.40.86At5g55390835632EDM2Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.O.I.H.G.S.X.
0.1912.70.87At5g185252745988ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:CUL4 RING ubiquitin ligase complex;BMFOPAO.I.H.G.S.X.
0.1811.40.86At4g16150827305calmodulin binding / transcription regulatorF:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.1811.40.86At3g45190823655SIT4 phosphatase-associated family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVO.I.H.G.S.X.
0.1811.40.86At5g14620831315DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.O.I.H.G.S.X.
0.168.80.88At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.157.80.87At1g12470837804Pep3/Vps18/deep orange family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.157.80.87At1g26370839179RNA helicase, putativeF:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPAO.I.H.G.S.X.
0.157.80.86At1g07990837314SIT4 phosphatase-associated family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPBVO.I.H.G.S.X.
0.157.80.87At3g12680820448HUA1 (ENHANCER OF AG-4 1)Member of the floral homeotic AGAMOUS pathway.O.I.H.G.S.X.
0.146.80.86At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.124.90.87At5g21040832228FBX2 (F-BOX PROTEIN 2)Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.O.I.H.G.S.X.
0.124.90.86At5g16280831488unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPVO.I.H.G.S.X.
0.114.10.86At2g48100819422exonuclease family proteinF:exonuclease activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOBO.I.H.G.S.X.
0.114.10.86At3g19770821514VPS9AGuanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.O.I.H.G.S.X.
0.092.80.87At2g35100818076ARAD1 (ARABINAN DEFICIENT 1)Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
49.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.199.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.899.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.499.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.299.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.699.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.999.5GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
18.899.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
18.699.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.599.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.599.5GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.999.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.599.4GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.399.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.399.4GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.699.3GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.399.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.299.3GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.099.2GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.399.1GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.299.1GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.999.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0472GO:0048193The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.Link to AmiGO
0.0352GO:0009626The rapid, localized death of plant cells in response to invasion by a pathogen.Link to AmiGO
0.0342GO:0010228The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.021100310Lysine degradationLink to KEGG PATHWAY
0.015103420Nucleotide excision repairLink to KEGG PATHWAY
0.011104120Ubiquitin mediated proteolysisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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