Co-expression analysis

Gene ID At1g26380
Gene name FAD-binding domain-containing protein
Module size 6 genes
NF 0.33
%ile 43.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5065.31.00At1g26380839180FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.H.G.S.X.
0.7385.50.83At1g26420839184FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.H.G.S.X.
0.5773.80.73At1g26410839183FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAMO.I.H.G.S.X.
0.3541.60.74At5g25250832596-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAVO.I.H.G.S.X.
0.3338.10.67At2g35980818171YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.O.I.H.G.S.X.
0.168.80.67At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
89.299.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
81.399.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
77.399.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
75.399.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
75.299.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
74.699.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
74.299.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
73.099.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
71.899.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
70.699.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
69.299.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
66.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
66.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
64.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
58.899.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.699.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.099.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.999.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.499.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.699.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.499.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.499.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
15.499.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.199.4GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.799.1GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
9.199.1GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
8.999.0GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0009700The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response.Link to AmiGO
0.1431GO:0010120The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.Link to AmiGO
0.0951GO:0051607Reactions triggered in response to the presence of a virus that act to protect the cell or organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.028100945Stilbenoid, diarylheptanoid and gingerol biosynthesisLink to KEGG PATHWAY
0.027100903Limonene and pinene degradationLink to KEGG PATHWAY

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.224210.1.S1_s_at, orthologous to the query gene, At1g26380

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8397.0PtpAffx.224210.1.S1_s_at-hypothetical protein-3e-9At1g26380FAD-binding domain-containing proteinO.I.H.G.S.X.
0.6388.1PtpAffx.206384.1.S1_at-hypothetical protein-3e-18At5g56960basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5380.5PtpAffx.224351.1.S1_at-hypothetical protein-1e-3At1g61610S-locus lectin protein kinase family proteinO.I.H.G.S.X.
0.5279.4Ptp.3031.2.A1_at---4e+0At3g05500rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.5178.9PtpAffx.221187.1.S1_at-hypothetical protein-6e-2At5g42930triacylglycerol lipaseO.I.H.G.S.X.
0.4673.7PtpAffx.54148.1.A1_at-hypothetical protein-7e-8At4g30900-O.I.H.G.S.X.
0.4167.7PtpAffx.153422.1.A1_at---2e-1At3g22240unknown proteinO.I.H.G.S.X.
0.4167.7PtpAffx.200813.1.S1_at-white-brown-complex ABC transporter family-3e-10At1g51460ABC transporter family proteinO.I.H.G.S.X.
0.4067.0PtpAffx.202233.1.S1_at-hypothetical protein-1e+0At1g10417-O.I.H.G.S.X.
0.4067.0PtpAffx.205724.1.S1_s_at-hypothetical protein-2e+0At4g30180transcription factor/ transcription regulatorO.I.H.G.S.X.
0.4067.0PtpAffx.222296.1.S1_at-hypothetical protein-2e-1At3g20390endoribonuclease L-PSP family proteinO.I.H.G.S.X.
0.3964.6PtpAffx.151801.1.A1_at-hypothetical protein-2e+0At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3964.6PtpAffx.208375.1.S1_at-cytochrome P450-1e-2At5g10600CYP81K2O.I.H.G.S.X.
0.3762.3PtpAffx.208918.1.S1_at-hypothetical protein-5e-2At3g62650unknown proteinO.I.H.G.S.X.
0.3762.3PtpAffx.16539.1.A1_s_at---4e+0At3g05500rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.3559.7PtpAffx.215202.1.S1_at---3e-1At2g32200unknown proteinO.I.H.G.S.X.
0.3559.7PtpAffx.121010.1.A1_at-hypothetical protein-3e-2At3g59080aspartyl protease family proteinO.I.H.G.S.X.
0.3559.7PtpAffx.204851.1.S1_at-hypothetical protein-1e-5At1g30370lipase class 3 family proteinO.I.H.G.S.X.
0.3458.3PtpAffx.225232.1.S1_at-hypothetical protein-2e-5At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.3458.3PtpAffx.221860.1.S1_s_at-cytochrome P450 /// cytochrome P450-3e-3At4g37430CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)O.I.H.G.S.X.
0.3458.3PtpAffx.209542.1.S1_x_at-hypothetical protein-5e-1At2g32200unknown proteinO.I.H.G.S.X.
0.3357.5PtpAffx.206380.1.S1_at-hypothetical protein-2e-13At5g57010calmodulin-binding family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.211624.1.S1_at-hypothetical protein-6e-1At3g11840PUB24 (PLANT U-BOX 24)O.I.H.G.S.X.
0.3153.7PtpAffx.207446.1.S1_at---2e-23At5g10530lectin protein kinase, putativeO.I.H.G.S.X.
0.3052.0PtpAffx.204500.1.S1_at-lysine/histidine transporter-2e-7At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.2950.5PtpAffx.2212.1.A1_at-hypothetical protein-1e+0At5g03920unknown proteinO.I.H.G.S.X.
0.2747.1PtpAffx.223441.1.S1_at-hypothetical protein-2e-7At4g08500MEKK1 (MAP KINASE KINASE KINASE 1)O.I.H.G.S.X.
0.2747.1PtpAffx.225845.1.S1_s_at-hypothetical protein-4e-26At1g11300ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.2441.8PtpAffx.12609.1.S1_at---5e+0Atmg01040-O.I.H.G.S.X.
0.2340.5PtpAffx.85524.1.S1_s_at-hypothetical protein-3e-1At5g62490ATHVA22BO.I.H.G.S.X.
0.1626.9PtpAffx.218821.1.S1_x_at-hypothetical protein-2e+0At4g05000VPS28-2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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