Co-expression analysis

Gene ID At1g24150
Gene name FH4 (FORMIN HOMOLOGUE 4)
Module size 7 genes
NF 0.43
%ile 60.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5570.61.00At1g24150839028FH4 (FORMIN HOMOLOGUE 4)Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.O.I.H.G.S.X.
0.6176.70.86At4g11850826791PLDGAMMA1phospholipase D (gamma)O.I.H.G.S.X.
0.5570.60.82At1g18390838420ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.5065.30.84At2g20960816630pEARLI4F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAO.I.H.G.S.X.
0.3541.60.84At2g02220814753PSKR1 (PHYTOSULFOKIN RECEPTOR 1)Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).O.I.H.G.S.X.
0.3541.60.82At1g03740839423ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.H.G.S.X.
0.2726.20.82At4g08850826456kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
88.999.9GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
39.099.8E-MEXP-791-raw-cel-1122937587
33.999.7E-MEXP-791-raw-cel-1122937623
24.299.6GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
22.499.6GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
21.999.6E-MEXP-791-raw-cel-1122937605
20.599.6GSM39200Col_C2GSE2169rre1 and rre2 mutantsLink to GEO
20.599.6GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
19.499.6GSM39203Col_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
16.099.5GSM39206Col_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
14.699.4GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
13.299.4GSM39204Col_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
12.599.3GSM39192RRE1_C2GSE2169rre1 and rre2 mutantsLink to GEO
12.499.3GSM131578ATGE_31_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.599.3GSM39205Col_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
11.399.3GSM131580ATGE_32_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.399.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.299.2GSM131576ATGE_31_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.299.2GSM131577ATGE_31_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.399.2GSM39201Col_C3GSE2169rre1 and rre2 mutantsLink to GEO
10.199.2GSM39208RRE2_C2GSE2169rre1 and rre2 mutantsLink to GEO
10.199.2GSM131581ATGE_32_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.999.1GSM39199Col_C1GSE2169rre1 and rre2 mutantsLink to GEO
9.899.1GSM39191RRE1_C1GSE2169rre1 and rre2 mutantsLink to GEO
9.699.1GSM39193RRE1_C3GSE2169rre1 and rre2 mutantsLink to GEO
9.199.1GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1821GO:0030041Assembly of actin filaments by the addition of actin monomers to a filament.Link to AmiGO
0.0611GO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.Link to AmiGO
0.0151GO:0007169The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.095100565Ether lipid metabolismLink to KEGG PATHWAY
0.054100564Glycerophospholipid metabolismLink to KEGG PATHWAY
0.028104144EndocytosisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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