Co-expression analysis

Gene ID At1g23990
Gene name transposable element gene
Module size 69 genes
NF 0.52
%ile 72.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8592.41.00At1g239903766788transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.91At2g12610815735transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.93At3g30610822776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.91At4g09220826504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.6378.10.91At3g42440823246transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.92At2g055503768218transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.90At3g440303769618-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.91At2g24920817030transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.91At3g25090822100F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6075.70.91At3g43390823419transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At3g313403769175transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.90At3g28590822489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.91At4g038003770157transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.91At2g061503767897transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.92At1g576403767555transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.91At2g126803768407transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.91At4g08430826402Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;OMPBFAVO.I.H.G.S.X.
0.5673.00.92At3g313603769181transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.92At1g375373767073transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.91At1g36020840505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.90At2g058203768385transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.91At2g144303768299transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.91At3g31915822932transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.91At1g087353766684transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.91At1g301503766846transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.91At1g357603766961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.92At4g09290826512transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.91At5g29050833041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.90At2g29770817527kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAO.I.H.G.S.X.
0.5368.60.91At1g27870839680nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.5368.60.91At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.90At5g28190832895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBVO.I.H.G.S.X.
0.5166.30.90At2g064903768412transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.91At3g42300823220transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.91At4g075403770365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.92At3g29640822637transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.90At1g433003767304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.91At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.91At5g357103771292transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.90At2g115903768652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.91At1g417953767198transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.90At4g080903770060transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.92At5g26020832671transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.90At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.92At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.91At2g21680816706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.4862.50.91At4g03750825677transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.90At3g42060823174myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PFO.I.H.G.S.X.
0.4761.20.89At3g442703769630transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.89At1g35860840488TOC75-I (translocon outer membrane complex 75-I)TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the geneO.I.H.G.S.X.
0.4761.20.90At2g11620815635unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.H.G.S.X.
0.4761.20.90At2g150603767889transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.91At2g070303768139transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.90At2g106503767860transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.90At1g362703766988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.89At5g332503771111transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.90At2g061803768579transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.91At2g05030815051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.91At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.90At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.90At4g038603770318transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.90At3g42390823235unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4558.30.90At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.90At2g10090815466transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.90At4g089703769794transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.90At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.90At2g12520815726transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.90At1g29620839839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.40.91At1g312103766867transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.699.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.399.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.199.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
40.499.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.299.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.399.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.899.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.999.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.899.6GSM258003LMPC-derived phloem_2GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
23.299.6E-ATMX-35-raw-cel-1574334832
22.299.6GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
21.799.6E-ATMX-35-raw-cel-1574334816
21.499.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.199.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.499.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.399.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.299.5GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
16.099.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.999.5GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
15.099.4E-MEXP-807-raw-cel-1173273060
14.799.4GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
13.399.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.999.3E-MEXP-807-raw-cel-1173273170
12.199.3GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
12.099.3GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.099.3E-MEXP-807-raw-cel-1173273116
11.899.3GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.899.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.599.3GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
11.299.2GSM258002LMPC-derived phloem_1GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
10.999.2E-MEXP-807-raw-cel-1173273223
10.799.2GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.099.2GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.999.1E-ATMX-35-raw-cel-1574334800
9.799.1GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.199.1GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.999.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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