Co-expression analysis

Gene ID At1g23800
Gene name ALDH2B7
Module size 52 genes
NF 0.79
%ile 94.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7989.11.00At1g23800838991ALDH2B7Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.O.I.H.G.S.X.
0.9195.60.69At4g16480827346INT4 (INOSITOL TRANSPORTER 4)Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol.O.I.H.G.S.X.
0.8994.60.67At1g22760838882PAB3 (POLY(A) BINDING PROTEIN 3)Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.O.I.H.G.S.X.
0.8793.50.68At3g05960819766STP6 (SUGAR TRANSPORTER 6)Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.O.I.H.G.S.X.
0.8693.10.66At3g17630821030ATCHX19 (CATION/H+ EXCHANGER 19)member of Putative Na+/H+ antiporter familyO.I.H.G.S.X.
0.8693.10.67At5g25550832630leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.8592.40.64At1g18280838408protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;POBMO.I.H.G.S.X.
0.8592.40.66At1g07850837300transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFOO.I.H.G.S.X.
0.8592.40.68At4g10440826636dehydration-responsive family proteinF:unknown;P:unknown;C:unknown;PBOAO.I.H.G.S.X.
0.8592.40.65At2g16120816109mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.H.G.S.X.
0.8491.90.62At3g18360821365VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVAO.I.H.G.S.X.
0.8491.90.65At3g51490824312TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plant-type vacuole membrane, membrane;BFMPOAO.I.H.G.S.X.
0.8491.90.67At2g32890817850RALFL17 (RALF-LIKE 17)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.O.I.H.G.S.X.
0.8491.90.65At4g11030826704long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.8491.90.65At3g17720821040pyridoxal-dependent decarboxylase family proteinF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOMO.I.H.G.S.X.
0.8491.90.61At4g08670826433protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;OPMBFVO.I.H.G.S.X.
0.8391.40.62At1g24400839057LHT2 (LYSINE HISTIDINE TRANSPORTER 2)High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthersO.I.H.G.S.X.
0.8391.40.64At1g72960843627root hair defective 3 GTP-binding (RHD3) family proteinF:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMBO.I.H.G.S.X.
0.8391.40.68At5g25400832612phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.8391.40.68At5g03250831894phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PMO.I.H.G.S.X.
0.8290.90.62At1g32250840117calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.8290.90.73At2g16750816176protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.8290.90.64At2g07560815329AHA6 (Arabidopsis H(+)-ATPase 6)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAVO.I.H.G.S.X.
0.8290.90.66At1g50310841453STP9 (SUGAR TRANSPORTER 9)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.H.G.S.X.
0.8190.40.62At4g25950828701VATG3 (vacuolar ATP synthase G3)V-ATPase G-subunit like proteinO.I.H.G.S.X.
0.8190.40.64At4g02140827460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.8190.40.63At5g53820835463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.8089.80.64At1g80660844405AHA9F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:proton transport;C:plasma membrane;BMOFPAVO.I.H.G.S.X.
0.8089.80.62At2g04675815010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8089.80.63At3g08560820003VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2)F:hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuole, mitochondrial proton-transporting ATP synthase complex;MOFPABO.I.H.G.S.X.
0.8089.80.65At5g62850836406AtVEX1 (VEGETATIVE CELL EXPRESSED1)Encodes a protein that is expressed in vegetative cells of pollen.O.I.H.G.S.X.
0.8089.80.62At2g30630817613unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.7989.10.63At2g28355817383LCR5 (Low-molecular-weight cysteine-rich 5)F:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.H.G.S.X.
0.7989.10.65At3g21970821756receptor-like protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7989.10.62At1g71680843494amino acid transmembrane transporterF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBVO.I.H.G.S.X.
0.7888.60.64At3g12660820446FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR)fasciclin-like arabinogalactan-protein, family (FLA14)O.I.H.G.S.X.
0.7888.60.63At5g03620831777subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.H.G.S.X.
0.7788.00.68At1g15460838116BOR4 (REQUIRES HIGH BORON 4)Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.O.I.H.G.S.X.
0.7788.00.61At1g04670839451unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PAFO.I.H.G.S.X.
0.7788.00.63At5g66020836732ATSAC1B (SUPPRESSOR OF ACTIN 1B)Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. non-consensus AT donor splice site at exon 7, TA donor splice site at exon 10, AT acceptor splice at exon 13.O.I.H.G.S.X.
0.7687.40.63At4g25040828607integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.7687.40.64At2g30290817579vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBAO.I.H.G.S.X.
0.7687.40.64At3g19090821444RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFBO.I.H.G.S.X.
0.7486.10.62At4g13230826939late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PMBOFO.I.H.G.S.X.
0.7486.10.62At2g22950816826calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.H.G.S.X.
0.7385.50.64At1g26320839174NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPAO.I.H.G.S.X.
0.7385.50.63At1g68750843206ATPPC4Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.O.I.H.G.S.X.
0.7184.20.65At1g07795837294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6982.90.64At1g52570841689PLDALPHA2 (phosphlipase d alpha 2)member of C2-PLD subfamilyO.I.H.G.S.X.
0.6378.10.61At1g26610839201zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFVO.I.H.G.S.X.
0.6075.70.62At1g30350839915pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.H.G.S.X.
0.5469.50.64At1g08730837394XICClass XI myosin geneO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.699.9E-ATMX-35-raw-cel-1574334832
61.299.8E-ATMX-35-raw-cel-1574334800
54.299.8E-ATMX-35-raw-cel-1574334816
48.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.599.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.599.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.199.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.899.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.899.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.499.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.499.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
34.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.099.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.899.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.899.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.699.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.699.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.199.6GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
21.999.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.199.6GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.399.5GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.999.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.699.5GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
15.099.4GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
13.399.4GSM133780Lindsey_1-3_globular-apical_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.999.2GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.699.1GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
8.899.0GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0653GO:0055085The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute.Link to AmiGO
0.0562GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0482GO:0006754The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.048200071Fatty acid metabolismLink to KEGG PATHWAY
0.041400190Oxidative phosphorylationLink to KEGG PATHWAY
0.034200620Pyruvate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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