CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g22650

Gene name beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative

Module size 6 genes

NF 0.08

%ile 5.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At1g22650 838871 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:sucrose catabolic process, using beta-fructofuranosidase;C:cellular_component unknown;OPB O.I. H.G. S.X.
0.13 5.8 0.79 At4g24730 828575 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. H.G. S.X.
0.12 4.9 0.78 At5g03370 831859 acylphosphatase family F:acylphosphatase activity;P:biological_process unknown;C:unknown;BOMAPF O.I. H.G. S.X.
0.11 4.1 0.79 At1g80510 844390 amino acid transporter family protein Encodes a close relative of the amino acid transporter ANT1 (AT3G11900). O.I. H.G. S.X.
0.04 0.9 0.79 At5g08200 830716 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:cellular_component unknown;MPOBF O.I. H.G. S.X.
0.02 0.4 0.78 At1g73670 843702 ATMPK15 member of MAP Kinase O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At1g22650	838871	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:sucrose catabolic process, using beta-fructofuranosidase;C:cellular_component unknown;OPB	O.I.	H.G.	S.X.
0.13	5.8	0.79	At4g24730	828575	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	H.G.	S.X.
0.12	4.9	0.78	At5g03370	831859	acylphosphatase family	F:acylphosphatase activity;P:biological_process unknown;C:unknown;BOMAPF	O.I.	H.G.	S.X.
0.11	4.1	0.79	At1g80510	844390	amino acid transporter family protein	Encodes a close relative of the amino acid transporter ANT1 (AT3G11900).	O.I.	H.G.	S.X.
0.04	0.9	0.79	At5g08200	830716	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:cellular_component unknown;MPOBF	O.I.	H.G.	S.X.
0.02	0.4	0.78	At1g73670	843702	ATMPK15	member of MAP Kinase	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
72.4 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.0 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.8 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.9 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
62.2 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.3 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.0 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
59.2 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.4 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.6 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.4 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.4 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.8 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.6 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.9 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.1 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.1 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.7 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.3 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.7 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
17.4 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.4 99.5 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3 99.4 GSM131326 AtGen_6-3522_Saltstress-Roots-12.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
14.6 99.4 GSM62704 arf6 arf8 flowers_stage 13-14 GSE2848 Auxin Response Factor mediated flower gene expression
9.6 99.1 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.6 99.1 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.6 99.0 GSM62693 arf6 arf8 flowers_stage 1-14_IAA GSE2847 Auxin induction in wild type and arf6 arf8 flowers

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
72.4	99.9	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.0	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.8	99.9	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
64.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.9	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
62.2	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.3	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.0	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
59.2	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
57.4	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.6	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.4	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.4	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.1	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.8	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.6	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.9	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.1	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.1	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.7	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.3	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.7	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
17.4	99.5	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.4	99.5	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3	99.4	GSM131326	AtGen_6-3522_Saltstress-Roots-12.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
14.6	99.4	GSM62704	arf6 arf8 flowers_stage 13-14	GSE2848	Auxin Response Factor mediated flower gene expression
9.6	99.1	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.6	99.1	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.6	99.0	GSM62693	arf6 arf8 flowers_stage 1-14_IAA	GSE2847	Auxin induction in wild type and arf6 arf8 flowers

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.065 1 GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
0.033 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.065	1	GO:0016998	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
0.033	1	GO:0006865	The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.028 1 00620 Pyruvate metabolism

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.028	1	00620	Pyruvate metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	At1g22650
Gene name	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative
Module size	6 genes
NF	0.08
%ile	5.2

Co-expression analysis

Gene ID At1g22650 Gene name beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative Module size 6 genes NF 0.08 %ile 5.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.028100620Pyruvate metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g22650

Gene name beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative

Module size 6 genes

NF 0.08

%ile 5.2

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.028 1 00620 Pyruvate metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays