Co-expression analysis

Gene ID At1g22280
Gene name protein phosphatase 2C, putative / PP2C, putative
Module size 6 genes
NF 0.63
%ile 84.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5570.61.00At1g22280838835protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, plasma membrane;PMOBFVAO.I.H.G.S.X.
0.6781.60.90At2g37940818371-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.6781.60.90At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.H.G.S.X.
0.6781.60.88At5g37070833678unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.6781.60.92At5g61210836242SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formationO.I.H.G.S.X.
0.6075.70.91At5g02290831880NAKEncodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.799.8E-MEXP-1138-raw-cel-1432773034
36.799.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
36.099.7E-MEXP-1138-raw-cel-1432773066
33.499.7E-MEXP-285-raw-cel-440782725
33.399.7E-MEXP-1138-raw-cel-1432773322
32.999.7E-MEXP-1138-raw-cel-1432772522
32.899.7GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
32.199.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
32.099.7E-MEXP-285-raw-cel-440782791
32.099.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
31.699.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
31.599.7E-MEXP-1138-raw-cel-1432772586
30.699.7GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
30.599.7E-MEXP-1138-raw-cel-1432773258
29.899.7E-MEXP-1138-raw-cel-1432772650
29.899.7E-MEXP-1138-raw-cel-1432772554
29.699.7E-MEXP-1138-raw-cel-1432772618
29.699.7E-MEXP-1138-raw-cel-1432773290
28.799.7GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
27.999.7E-MEXP-1138-raw-cel-1432772778
27.299.7E-MEXP-1138-raw-cel-1432772682
26.699.7GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
26.499.7E-MEXP-1138-raw-cel-1432772906
26.499.7GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
26.299.7E-MEXP-1138-raw-cel-1432772810
25.899.7E-MEXP-1138-raw-cel-1432773098
25.899.7E-MEXP-1138-raw-cel-1432773002
25.799.7E-MEXP-1138-raw-cel-1432772970
25.499.6E-MEXP-1138-raw-cel-1432772714
25.299.6E-ATMX-35-raw-cel-1574334864
24.199.6E-MEXP-1138-raw-cel-1432772938
24.099.6E-MEXP-1138-raw-cel-1432773162
23.699.6E-MEXP-1138-raw-cel-1432772842
23.699.6E-MEXP-1138-raw-cel-1432773130
23.599.6GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
23.299.6E-ATMX-35-raw-cel-1574334880
23.099.6E-MEXP-1138-raw-cel-1432772746
21.899.6E-MEXP-1138-raw-cel-1432773354
21.399.6E-ATMX-35-raw-cel-1574334848
21.299.6E-MEXP-1138-raw-cel-1432773194
19.999.6GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.799.6E-MEXP-1138-raw-cel-1432772874
19.099.5GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
18.699.5GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
18.599.5E-MEXP-1138-raw-cel-1432773386
18.499.5GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
18.099.5GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
17.399.5E-MEXP-1138-raw-cel-1432773226
16.999.5GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
16.899.5GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
16.799.5GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
16.599.5GSM290753root - 01% oxygen - 2h - EGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
16.199.5GSM131237AtGen_6-0221_Control-Roots-1.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
16.099.5GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
15.599.5GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
13.599.4GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
13.399.4E-ATMX-1-raw-cel-1112746095
13.399.4GSM152141siz1-3 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
12.299.3GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
12.299.3GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
12.099.3GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.399.3E-MEXP-807-raw-cel-1173273144
11.199.2E-MEXP-807-raw-cel-1173273252
10.599.2GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
10.499.2GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
10.199.2GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.699.1GSM133894Schroeder_1-12_JS44-starve-96h_Rep1_ATH1GSE5744Response to potassium starvation in rootsLink to GEO
9.399.1GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
9.299.1GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.099.1GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
9.099.1GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.699.0E-MEXP-546-raw-cel-863289586
8.699.0GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0051245Any process that stops, prevents, or reduces the rate of the cellular defense response.Link to AmiGO
0.2221GO:0010363Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.Link to AmiGO
0.2001GO:0006612The process of directing proteins towards a membrane, usually using signals contained within the protein.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.074204130SNARE interactions in vesicular transportLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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