Co-expression analysis

Gene ID At1g21200
Gene name transcription factor
Module size 57 genes
NF 0.23
%ile 23.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g21200838715transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POMBVAFO.I.H.G.S.X.
0.4659.80.90At3g12250820405TGA6 (TGACG MOTIF-BINDING FACTOR 6)basic leucine zipper transcription factor involved in the activation of SA-responsive genes.O.I.H.G.S.X.
0.3745.00.88At2g17570816264undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinF:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;OBMAFPO.I.H.G.S.X.
0.3439.80.89At5g40470834045-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFBO.I.H.G.S.X.
0.3338.10.90At3g19770821514VPS9AGuanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.O.I.H.G.S.X.
0.3133.80.89At2g17110816215unknown proteinF:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFBOO.I.H.G.S.X.
0.3133.80.87At5g10600830925CYP81K2member of CYP81KO.I.H.G.S.X.
0.3133.80.89At4g26980828806unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3133.80.88At4g02640828219BZO2H1Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10. AtbZIP10 shuttles between the nucleus and the cytoplasm. It binds consensus G- and C-box DNA sequences. AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.O.I.H.G.S.X.
0.3032.10.88At5g55860835681unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.H.G.S.X.
0.2830.30.89At5g15710831425F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.2830.30.87At1g48040841222catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVAO.I.H.G.S.X.
0.2830.30.89At5g20610832183unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAVO.I.H.G.S.X.
0.2726.20.89At1g22040838809kelch repeat-containing F-box family proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;MPBOVFAO.I.H.G.S.X.
0.2624.40.87At1g01440837155extra-large G-protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.2624.40.87At5g42870834298lipin family proteinF:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOPO.I.H.G.S.X.
0.2624.40.89At2g39480818533PGP6 (P-GLYCOPROTEIN 6)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPVO.I.H.G.S.X.
0.2624.40.90At4g32160829348phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAVO.I.H.G.S.X.
0.2624.40.88At5g28040832874transcription regulatorF:transcription regulator activity;P:unknown;C:unknown;PMBOFO.I.H.G.S.X.
0.2624.40.89At2g24530816989unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.2624.40.90At2g17030816206F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2522.60.88At1g22870838892protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.2420.70.88At3g07930819984HhH-GPD base excision DNA repair family proteinF:unknown;P:base-excision repair;C:unknown;MPOO.I.H.G.S.X.
0.2420.70.88At3g55320824698PGP20 (P-GLYCOPROTEIN 20)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPVO.I.H.G.S.X.
0.2420.70.88At5g185252745988ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:CUL4 RING ubiquitin ligase complex;BMFOPAO.I.H.G.S.X.
0.2319.30.87At3g28690822499protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.2319.30.88At4g21350827885PUB8 (PLANT U-BOX 8)Encodes a U-box/ARM repeat protein required fore self-incompatibility.O.I.H.G.S.X.
0.2319.30.89At2g22120816746protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVO.I.H.G.S.X.
0.2217.50.88At5g55600835654agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing proteinF:RNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.2217.50.90At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.O.I.H.G.S.X.
0.2115.80.87At2g22090816744UBP1 interacting protein 1a (UBA1a)encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.O.I.H.G.S.X.
0.2115.80.88At4g33890829532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.2014.40.88At1g11020837644zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVO.I.H.G.S.X.
0.2014.40.88At1g66340842951ETR1 (ETHYLENE RESPONSE 1)Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.O.I.H.G.S.X.
0.2014.40.88At1g22790838885unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.2014.40.88At3g23540821933-F:unknown;P:unknown;C:cellular_component unknown;OBMFPAO.I.H.G.S.X.
0.2014.40.88At5g66950836829catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBAO.I.H.G.S.X.
0.2014.40.88At3g05675819735protein bindingF:protein binding;P:unknown;C:unknown;PO.I.H.G.S.X.
0.1912.70.87At3g29270822584ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.1912.70.87At3g56740824841ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOBO.I.H.G.S.X.
0.1912.70.87At5g56240835723-F:unknown;P:biological_process unknown;C:unknown;OMFPBO.I.H.G.S.X.
0.1912.70.88At1g10720837615BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFVBO.I.H.G.S.X.
0.1912.70.88At3g20650821612mRNA capping enzyme family proteinF:catalytic activity;P:mRNA capping;C:chloroplast;OVMFPBO.I.H.G.S.X.
0.1811.40.88At1g25280839112AtTLP10 (TUBBY LIKE PROTEIN 10)Member of TLP familyO.I.H.G.S.X.
0.1710.20.88At1g16710838242HAC12 (histone acetyltransferase of the CBP family 12)Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.O.I.H.G.S.X.
0.1710.20.88At5g60570836178kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVAFO.I.H.G.S.X.
0.1710.20.87At1g75850843918VPS35B (VPS35 HOMOLOG B)F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.168.80.87At4g31150829243endonuclease V family proteinF:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPFO.I.H.G.S.X.
0.168.80.88At5g50230835088nucleotide bindingF:nucleotide binding;P:multicellular organismal development;C:heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.168.80.88At5g35980833590protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAO.I.H.G.S.X.
0.157.80.88At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.157.80.87At1g24190839032SNL3 (SIN3-LIKE 3)Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.O.I.H.G.S.X.
0.146.80.88At1g12470837804Pep3/Vps18/deep orange family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.146.80.88At1g54115841851CCX4 (CATION CALCIUM EXCHANGER 4)Involved in cation (Na and K) homeostasis.O.I.H.G.S.X.
0.146.80.87At4g39370830092UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.135.80.87At1g22860838891unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.135.80.87At3g03570821234-F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.099.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.599.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.299.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.299.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.099.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.499.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.199.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.799.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.999.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.099.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.199.6GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.999.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.799.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.099.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
19.799.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.199.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.699.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.799.4GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.199.4GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.899.3GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.599.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.899.2GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.599.2GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.299.2GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
10.199.2GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.499.1GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.199.1GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.099.1GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.099.1GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0341GO:0031204The process by which a protein translocates through the ER membrane posttranslationally.Link to AmiGO
0.0341GO:0000919The process of assembly, maturation, and growth of the cell plate to the cell periphery in cells that divide by cell plate formation; often involves deposition of cell wall material in and around the phragmoplast.Link to AmiGO
0.0341GO:0002240A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.023100510N-Glycan biosynthesisLink to KEGG PATHWAY
0.021103410Base excision repairLink to KEGG PATHWAY
0.020100900Terpenoid backbone biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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