CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g21100

Gene name O-methyltransferase, putative

Module size 15 genes

NF 0.43

%ile 61.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.39 48.4 1.00 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. H.G. S.X.
0.67 81.6 0.66 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. H.G. S.X.
0.67 81.6 0.64 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. H.G. S.X.
0.64 78.9 0.66 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. H.G. S.X.
0.64 78.9 0.67 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. H.G. S.X.
0.57 73.8 0.64 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. H.G. S.X.
0.55 70.6 0.67 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.50 65.3 0.67 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. H.G. S.X.
0.48 62.5 0.66 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. H.G. S.X.
0.43 55.3 0.74 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. H.G. S.X.
0.42 53.9 0.69 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. H.G. S.X.
0.31 33.8 0.67 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. H.G. S.X.
0.29 30.3 0.68 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. H.G. S.X.
0.29 30.3 0.62 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.22 17.5 0.74 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.39	48.4	1.00	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	H.G.	S.X.
0.67	81.6	0.66	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	H.G.	S.X.
0.67	81.6	0.64	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	H.G.	S.X.
0.64	78.9	0.66	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	H.G.	S.X.
0.64	78.9	0.67	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	H.G.	S.X.
0.57	73.8	0.64	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	H.G.	S.X.
0.55	70.6	0.67	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.50	65.3	0.67	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	H.G.	S.X.
0.48	62.5	0.66	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	H.G.	S.X.
0.43	55.3	0.74	At4g13860	827020	glycine-rich RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	H.G.	S.X.
0.42	53.9	0.69	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	H.G.	S.X.
0.31	33.8	0.67	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	H.G.	S.X.
0.29	30.3	0.68	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	H.G.	S.X.
0.29	30.3	0.62	At5g23830	832448	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.22	17.5	0.74	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.62	77.3	0.59	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.56	73.0	0.55	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	H.G.	S.X.
0.56	73.0	0.55	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	H.G.	S.X.
0.55	70.6	0.58	At5g42580	834265	CYP705A12	a member of the cytochrome P450 family	O.I.	H.G.	S.X.
0.47	61.2	0.57	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	H.G.	S.X.
0.42	53.9	0.52	At3g02610	820709	acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	H.G.	S.X.
0.36	43.6	0.60	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	H.G.	S.X.
0.36	43.6	0.54	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	H.G.	S.X.
0.35	41.6	0.57	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	H.G.	S.X.
0.33	38.1	0.74	At1g70850	843422	MLP34 (MLP-LIKE PROTEIN 34)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	0.60	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	H.G.	S.X.
0.32	35.7	0.68	At1g14120	837971	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	H.G.	S.X.
0.30	32.1	0.56	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	H.G.	S.X.
0.29	30.3	0.51	At5g24140	832479	SQP2	Encodes a protein with similarity to squalene monoxygenases.	O.I.	H.G.	S.X.
0.28	30.3	0.59	At1g73300	843664	scpl2 (serine carboxypeptidase-like 2)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	H.G.	S.X.
0.25	22.6	0.56	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	H.G.	S.X.

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
179.9 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
115.5 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
84.8 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
76.3 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
63.9 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
62.3 99.8 E-MEXP-509-raw-cel-829148348
59.0 99.8 E-MEXP-509-raw-cel-829148456
57.6 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.0 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.3 99.8 E-MEXP-509-raw-cel-829148561
49.3 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.1 99.8 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
47.1 99.8 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
46.8 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.8 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.1 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.8 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.7 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.8 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.1 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.1 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.7 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.0 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.2 99.7 E-MEXP-509-raw-cel-829148129
22.4 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.9 99.5 E-MEXP-509-raw-cel-829148201
14.7 99.4 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.4 99.4 E-MEXP-509-raw-cel-829148525
13.8 99.4 E-MEXP-509-raw-cel-829148313
13.0 99.4 E-MEXP-509-raw-cel-829148420
12.9 99.3 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
11.8 99.3 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.5 99.2 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.0 99.2 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.9 99.1 E-MEXP-509-raw-cel-829148597
8.9 99.0 E-MEXP-828-raw-cel-1156922634

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
179.9	100.0	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
115.5	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
84.8	99.9	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
76.3	99.9	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
63.9	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
62.3	99.8	E-MEXP-509-raw-cel-829148348
59.0	99.8	E-MEXP-509-raw-cel-829148456
57.6	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.3	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.6	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.0	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.2	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.3	99.8	E-MEXP-509-raw-cel-829148561
49.3	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.1	99.8	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
47.1	99.8	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
46.8	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.8	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.1	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.8	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.7	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.8	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
37.1	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.1	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.7	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.0	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.2	99.7	E-MEXP-509-raw-cel-829148129
22.4	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.9	99.5	E-MEXP-509-raw-cel-829148201
14.7	99.4	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.4	99.4	E-MEXP-509-raw-cel-829148525
13.8	99.4	E-MEXP-509-raw-cel-829148313
13.0	99.4	E-MEXP-509-raw-cel-829148420
12.9	99.3	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
11.8	99.3	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.5	99.2	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.0	99.2	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.9	99.1	E-MEXP-509-raw-cel-829148597
8.9	99.0	E-MEXP-828-raw-cel-1156922634

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.333 3 GO:0080003 The chemical reactions and pathways involving the triterpene thalianol.
0.118 1 GO:0010263 The chemical reactions and pathways resulting in the formation of tricyclic triterpenoid compounds, terpenoids with 6 isoprene units and 3 carbon rings.
0.080 1 GO:0019745 The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.

SF	Genes	GO ID	Process Name
0.333	3	GO:0080003	The chemical reactions and pathways involving the triterpene thalianol.
0.118	1	GO:0010263	The chemical reactions and pathways resulting in the formation of tricyclic triterpenoid compounds, terpenoids with 6 isoprene units and 3 carbon rings.
0.080	1	GO:0019745	The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g21100
Gene name	O-methyltransferase, putative
Module size	15 genes
NF	0.43
%ile	61.3

Co-expression analysis

Gene ID At1g21100 Gene name O-methyltransferase, putative Module size 15 genes NF 0.43 %ile 61.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g21100

Gene name O-methyltransferase, putative

Module size 15 genes

NF 0.43

%ile 61.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays