Co-expression analysis

Gene ID At1g19835
Gene name unknown protein
Module size 53 genes
NF 0.14
%ile 10.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g19835838571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.H.G.S.X.
0.2522.60.83At1g65010842809unknown proteinF:unknown;P:unknown;C:chloroplast;MOBFPAVO.I.H.G.S.X.
0.2522.60.84At3g23690821950basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOBO.I.H.G.S.X.
0.2319.30.85At2g01910814722ATMAP65-6Binds microtubules. Induces a crisscross mesh of microtubules, not bundles. Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria.O.I.H.G.S.X.
0.2319.30.84At3g06410819815nucleic acid binding / zinc ion bindingF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;OMPFBVO.I.H.G.S.X.
0.2319.30.84At4g36890829842IRX14 (irregular xylem 14)The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.O.I.H.G.S.X.
0.2319.30.85At3g23750821957leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.2319.30.83At3g60860825257guanine nucleotide exchange family proteinF:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBO.I.H.G.S.X.
0.2217.50.83At4g10840826680kinesin light chain-relatedF:binding;P:unknown;C:plasma membrane;MBOFAPVO.I.H.G.S.X.
0.2217.50.84At5g08130830708BIM1Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).O.I.H.G.S.X.
0.2217.50.84At3g11590820332unknown proteinF:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.H.G.S.X.
0.2115.80.85At2g22125816747bindingF:binding;P:biological_process unknown;C:plasma membrane;PMFOBAO.I.H.G.S.X.
0.2115.80.83At2g46225819230ABIL1 (Abi-1-like 1)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.O.I.H.G.S.X.
0.2014.40.84At5g59210836039myosin heavy chain-relatedF:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.2014.40.84At5g08080830702SYP132 (SYNTAXIN OF PLANTS 132)member of SYP13 Gene FamilyO.I.H.G.S.X.
0.1912.70.84At4g32330829367-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.1912.70.83At3g57420824909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall;OMPBAO.I.H.G.S.X.
0.1811.40.84At4g39050830060kinesin-related protein (MKRP2)F:protein binding, microtubule motor activity, zinc ion binding, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBVAO.I.H.G.S.X.
0.1710.20.83At5g35180833472phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:plasma membrane;POMFVO.I.H.G.S.X.
0.1710.20.84At2g41770818776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAO.I.H.G.S.X.
0.1710.20.83At3g45850823728kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOBFPAVO.I.H.G.S.X.
0.1710.20.83At3g53570824525AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast.O.I.H.G.S.X.
0.168.80.83At2g34680818033AIR9isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.O.I.H.G.S.X.
0.168.80.83At3g15610820803transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.H.G.S.X.
0.168.80.84At1g22060838811-F:unknown;P:unknown;C:vacuole;MOBFPAVO.I.H.G.S.X.
0.157.80.83At3g13360820536WIP3 (WPP-domain Interacting Protein 3)F:molecular_function unknown;P:biological_process unknown;C:nuclear envelope;OPMFBO.I.H.G.S.X.
0.157.80.83At1g03520839471glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOO.I.H.G.S.X.
0.157.80.84At5g04420830321kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOPFBVAO.I.H.G.S.X.
0.157.80.84At1g47550841164unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane, exocyst;MFPOBAO.I.H.G.S.X.
0.146.80.83At1g10670837610ACLA-1One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.O.I.H.G.S.X.
0.146.80.84At2g23980816931ATCNGC6member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.146.80.83At5g47780834829GAUT4 (Galacturonosyltransferase 4)Encodes a protein with putative galacturonosyltransferase activity.O.I.H.G.S.X.
0.146.80.83At2g42880818888ATMPK20member of MAP KinaseO.I.H.G.S.X.
0.135.80.84At4g22150828304PUX3Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3)O.I.H.G.S.X.
0.135.80.83At1g18700838451DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:endoplasmic reticulum;MOPFBO.I.H.G.S.X.
0.135.80.83At4g23650828465CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.O.I.H.G.S.X.
0.135.80.84At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.124.90.84At5g43320834350ckl8 (Casein Kinase I-like 8)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAO.I.H.G.S.X.
0.124.90.83At1g05500837052NTMC2T2.1F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOO.I.H.G.S.X.
0.103.40.83At1g10350837574DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.H.G.S.X.
0.103.40.83At1g53050841739protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.103.40.83At4g38040829960exostosin family proteinF:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFVO.I.H.G.S.X.
0.103.40.84At5g58440835957SNX2a (SORTING NEXIN 2a)F:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFOPABO.I.H.G.S.X.
0.092.80.83At1g76850844020SEC5A (EXOCYST COMPLEX COMPONENT SEC5)F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVBO.I.H.G.S.X.
0.092.80.83At1g22610838867C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFO.I.H.G.S.X.
0.092.80.83At1g69220843253SIK1Encodes a putative serine/threonine kinase (SIK1).O.I.H.G.S.X.
0.082.30.83At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPO.I.H.G.S.X.
0.082.30.83At4g26640828771WRKY20member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.082.30.83At4g39990830160RABA4B (RAB GTPASE HOMOLOG A4B)GTP-binding protein ATGB3O.I.H.G.S.X.
0.071.90.84At3g54290824596-F:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;PBOO.I.H.G.S.X.
0.071.90.83At1g59610842251ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)A high molecular weight GTPase whose GTP-binding domain shows a low homology to those of other plant dynamin-like proteins.Contains a pleckstrin homologous domain.O.I.H.G.S.X.
0.071.90.83At3g59950825165autophagy 4b (APG4b)F:peptidase activity;P:autophagy;C:chloroplast;MOFPO.I.H.G.S.X.
0.061.40.83At3g04470819603-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFBVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.299.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
50.999.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.799.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.199.7GSM133777Lindsey_1-4_globular-basal_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
36.099.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.199.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.599.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.199.7GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
31.499.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.799.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.399.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.299.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.999.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.499.6GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
20.399.6GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
17.899.5GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.399.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.999.5E-MEXP-285-raw-cel-440782725
15.099.4GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.899.4GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
13.799.4E-MEXP-807-raw-cel-1173273144
13.699.4E-MEXP-285-raw-cel-440782791
12.199.3E-MEXP-807-raw-cel-1173273252
11.899.3GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.799.3GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
11.699.3GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
11.399.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.299.2GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
10.799.2GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.499.1GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.399.1GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.399.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.199.1GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.099.1E-MEXP-1138-raw-cel-1432772906
9.099.1GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
8.899.0GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.899.0GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.899.0GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.799.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.799.0E-MEXP-1138-raw-cel-1432772746
8.699.0E-ATMX-35-raw-cel-1574334864

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0402GO:0016051The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.Link to AmiGO
0.0392GO:0007018Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.Link to AmiGO
0.0361GO:0010359Any process that modulates the frequency, rate or extent of anion channel activity.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.018100020Citrate cycle (TCA cycle)Link to KEGG PATHWAY
0.010101066Biosynthesis of alkaloids derived from terpenoid and polyketideLink to KEGG PATHWAY
0.009101063Biosynthesis of alkaloids derived from shikimate pathwayLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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