Co-expression analysis

Gene ID At1g19780
Gene name ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8)
Module size 94 genes
NF 0.46
%ile 65.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9797.61.00At1g19780838566ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.7284.80.90At3g56960824863PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4)Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.O.I.H.G.S.X.
0.7184.20.92At5g51030835176short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.6781.60.88At4g03620825662myosin heavy chain-relatedF:molecular_function unknown;P:response to cyclopentenone;C:unknown;MOFBPAVO.I.H.G.S.X.
0.6277.30.87At5g20810832204auxin-responsive protein, putative / small auxin up RNA (SAUR_B)F:calmodulin binding;P:response to auxin stimulus;C:peroxisome;POO.I.H.G.S.X.
0.6176.70.86At5g66740836807unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.90At3g12160820393RABA4D (RAB GTPASE HOMOLOG A4D)Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.O.I.H.G.S.X.
0.5673.00.89At2g13680815852CALS5 (CALLOSE SYNTHASE 5)Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.O.I.H.G.S.X.
0.5673.00.89At4g27110828819COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.5673.00.89At5g10500830914kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.5570.60.89At5g52360835312ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)F:actin binding;P:biological_process unknown;C:intracellular;MPOFO.I.H.G.S.X.
0.5570.60.86At2g45610819169hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAVO.I.H.G.S.X.
0.5570.60.86At3g01250821184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPO.I.H.G.S.X.
0.5469.50.88At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyO.I.H.G.S.X.
0.5469.50.88At2g13620815847ATCHX15member of Putative Na+/H+ antiporter familyO.I.H.G.S.X.
0.5469.50.86At4g30770829200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5469.50.89At4g18790827613NRAMP5member of Nramp2 familyO.I.H.G.S.X.
0.5469.50.88At5g36260833623aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOO.I.H.G.S.X.
0.5469.50.89At4g25590828664ADF7 (actin depolymerizing factor 7)F:actin binding;P:biological_process unknown;C:intracellular;MPOFO.I.H.G.S.X.
0.5267.40.85At1g63930842696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOO.I.H.G.S.X.
0.5267.40.89At5g42340834240binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBVO.I.H.G.S.X.
0.5267.40.87At1g12070837759Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOO.I.H.G.S.X.
0.5166.30.88At3g07960819987phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPFO.I.H.G.S.X.
0.5166.30.86At2g19770816496PRF5 (PROFILIN5)Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes.O.I.H.G.S.X.
0.5166.30.88At1g13890837948SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.O.I.H.G.S.X.
0.5065.30.86At5g14870831339CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18)Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery.O.I.H.G.S.X.
0.5065.30.86At5g27980832868seed maturation family proteinF:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;PBMOO.I.H.G.S.X.
0.5065.30.86At5g59370836056ACT4 (ACTIN 4)Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.O.I.H.G.S.X.
0.5065.30.88At4g25150828618acid phosphatase, putativeF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMO.I.H.G.S.X.
0.5065.30.88At5g47470834797nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BOPAMO.I.H.G.S.X.
0.4963.50.85At3g61230825295LIM domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.4963.50.88At3g51300824293ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)Encodes a pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins that interacts with RIC3 and RIC4 to control tip growth in pollen tubes. These three proteins promote the proper targeting of exocytic vesicles in the pollen tube tip. ROP1 activity is regulated by the REN1 GTPase activator protein.O.I.H.G.S.X.
0.4862.50.86At5g60740836195ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:endomembrane system, membrane;BOMFAPVO.I.H.G.S.X.
0.4862.50.89At1g44120841015C2 domain-containing protein / armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;PMOFBAO.I.H.G.S.X.
0.4862.50.88At3g42640823281AHA8 (Arabidopsis H(+)-ATPase 8)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAVO.I.H.G.S.X.
0.4761.20.87At5g02570831878histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleolus;MPOFO.I.H.G.S.X.
0.4761.20.87At3g59830825152ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:chloroplast;MOPBFVAO.I.H.G.S.X.
0.4761.20.86At5g45880834628pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.H.G.S.X.
0.4659.80.88At3g24620822058ROPGEF8Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.H.G.S.X.
0.4659.80.85At1g09600837487protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVAO.I.H.G.S.X.
0.4659.80.86At2g47030819317VGDH1F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.H.G.S.X.
0.4659.80.88At2g26490817190transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.H.G.S.X.
0.4659.80.87At3g01270821142pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.H.G.S.X.
0.4659.80.86At1g55570842006sks12 (SKU5 Similar 12)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.4659.80.86At3g62170825390VGDH2 (Vanguard 1 homolog 2)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.H.G.S.X.
0.4659.80.85At1g07330837244unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBAO.I.H.G.S.X.
0.4659.80.87At5g41780834183myosin heavy chain-relatedF:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.4558.30.86At3g13400820540sks13 (SKU5 Similar 13)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.4558.30.87At3g28750822507unknown proteinF:unknown;P:unknown;C:endomembrane system;POO.I.H.G.S.X.
0.4558.30.87At3g07820819973polygalacturonase 3 (PGA3) / pectinaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.4558.30.85At1g79910844330unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.H.G.S.X.
0.4558.30.87At4g35010829653BGAL11 (beta-galactosidase 11)putative beta-galactosidase (BGAL11 gene)O.I.H.G.S.X.
0.4558.30.85At5g14380831289AGP6 (Arabinogalactan proteins 6)Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.O.I.H.G.S.X.
0.4558.30.88At5g57690835876diacylglycerol kinaseF:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOBO.I.H.G.S.X.
0.4558.30.85At1g78940844233protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.H.G.S.X.
0.4457.20.85At1g64300842736protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVAO.I.H.G.S.X.
0.4457.20.86At5g19580832078glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOO.I.H.G.S.X.
0.4457.20.86At4g13240826941ROPGEF9Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.H.G.S.X.
0.4457.20.89At5g64790836600glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBOO.I.H.G.S.X.
0.4457.20.85At3g20200821564protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.4355.30.85At5g07430830634pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.
0.4355.30.86At1g52580841690ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.H.G.S.X.
0.4355.30.86At3g61160825288shaggy-related protein kinase beta / ASK-beta (ASK2)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAO.I.H.G.S.X.
0.4355.30.86At2g31830817740endonuclease/exonuclease/phosphatase family proteinF:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.4253.90.85At5g56640835765MIOX5Myo-Inositol Oxygenase gene familyO.I.H.G.S.X.
0.4253.90.87At2g02720814801pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.H.G.S.X.
0.4253.90.88At3g24720--O.I.H.G.S.X.
0.4253.90.88At4g36490829801SFH12 (SEC14-LIKE 12)F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:unknown;MPFOO.I.H.G.S.X.
0.4253.90.85At3g21180821671ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.O.I.H.G.S.X.
0.4253.90.87At4g04930825832DES-1-LIKEEncodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.O.I.H.G.S.X.
0.4152.40.85At1g11990837751unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4152.40.86At3g20220821566auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.H.G.S.X.
0.4152.40.85At5g15600831412SP1L4 (SPIRAL1-LIKE4)SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.O.I.H.G.S.X.
0.4152.40.87At3g54800824645pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:unknown;POMO.I.H.G.S.X.
0.4152.40.85At4g02250827589invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4152.40.86At5g39880833985unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4152.40.86At2g24370816973ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.4152.40.86At3g62710825445glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAMO.I.H.G.S.X.
0.4050.80.87At1g04470839512-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.4050.80.86At2g31500817708CPK24member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.4050.80.85At5g16500831511protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.H.G.S.X.
0.4050.80.87At5g20410832163MGD2Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation.O.I.H.G.S.X.
0.4050.80.86At5g50830835155unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVAO.I.H.G.S.X.
0.4050.80.86At1g19500838536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4050.80.85At2g27180817260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.85At2g17890816299CPK16member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.4050.80.85At4g27790828892calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.H.G.S.X.
0.3948.40.86At2g18470816362protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAO.I.H.G.S.X.
0.3948.40.86At2g13350815821C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.3948.40.85At5g23270832391STP11 (SUGAR TRANSPORTER 11)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.H.G.S.X.
0.3948.40.86At3g03800821141SYP131 (SYNTAXIN OF PLANTS 131)member of SYP13 Gene FamilyO.I.H.G.S.X.
0.3948.40.86At5g16540831516ZFN3 (ZINC FINGER NUCLEASE 3)Encodes a zinc finger protein.O.I.H.G.S.X.
0.3948.40.85At1g18990838480unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPFBVAO.I.H.G.S.X.
0.3948.40.87At4g02650828212epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOPFBAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
54.099.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.199.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.299.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.799.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.499.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.099.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.999.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.899.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.899.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.399.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.799.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.599.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.699.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.899.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.599.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.299.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.899.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.199.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.999.5GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.799.4E-MEXP-807-raw-cel-1173273170
14.299.4GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
13.599.4E-MEXP-807-raw-cel-1173273060
13.399.4GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
13.299.4E-MEXP-807-raw-cel-1173273223
11.399.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.399.1E-MEXP-807-raw-cel-1173273116

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0695GO:0009860Growth of pollen via tip extension of the intine wall.Link to AmiGO
0.0483GO:0006944The joining of two lipid bilayers to form a single membrane.Link to AmiGO
0.0382GO:0046488The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.046300562Inositol phosphate metabolismLink to KEGG PATHWAY
0.042304130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.032200053Ascorbate and aldarate metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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