CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g19380

Gene name unknown protein

Module size 35 genes

NF 0.44

%ile 62.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.65 79.6 1.00 At1g19380 838521 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.68 82.2 0.80 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. O.I. H.G. S.X.
0.68 82.2 0.80 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA O.I. H.G. S.X.
0.61 76.7 0.77 At4g36500 829802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.59 74.7 0.77 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.56 73.0 0.77 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. O.I. H.G. S.X.
0.55 70.6 0.77 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB O.I. H.G. S.X.
0.54 69.5 0.80 At1g57980 842165 purine permease-related F:purine transmembrane transporter activity;P:unknown;C:unknown;PBO O.I. H.G. S.X.
0.52 67.4 0.76 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. H.G. S.X.
0.52 67.4 0.81 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. H.G. S.X.
0.50 65.3 0.78 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. O.I. H.G. S.X.
0.50 65.3 0.80 At2g41100 818709 TCH3 (TOUCH 3) encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. O.I. H.G. S.X.
0.49 63.5 0.79 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. O.I. H.G. S.X.
0.49 63.5 0.74 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway O.I. H.G. S.X.
0.48 62.5 0.81 At5g13190 831158 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.47 61.2 0.73 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB O.I. H.G. S.X.
0.44 57.2 0.77 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA O.I. H.G. S.X.
0.43 55.3 0.77 At5g44070 834430 CAD1 (CADMIUM SENSITIVE 1) Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+. O.I. H.G. S.X.
0.43 55.3 0.75 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.
0.43 55.3 0.74 At4g20830 827831 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall;FBPOAM O.I. H.G. S.X.
0.42 53.9 0.75 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.41 52.4 0.73 At5g06320 830520 NHL3 encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane. O.I. H.G. S.X.
0.40 50.8 0.81 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. O.I. H.G. S.X.
0.39 48.4 0.81 At3g26980 822315 MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR) F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PF O.I. H.G. S.X.
0.38 46.7 0.74 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase O.I. H.G. S.X.
0.37 45.0 0.75 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. O.I. H.G. S.X.
0.36 43.6 0.84 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB O.I. H.G. S.X.
0.36 43.6 0.73 At1g27770 839670 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. O.I. H.G. S.X.
0.34 39.8 0.77 At5g26030 832672 FC1 (ferrochelatase 1) encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins O.I. H.G. S.X.
0.33 38.1 0.76 At1g19770 838565 ATPUP14 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. H.G. S.X.
0.32 35.7 0.73 At1g20510 838639 OPCL1 (OPC-8:0 COA LIGASE1) F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV O.I. H.G. S.X.
0.30 32.1 0.82 At1g08930 837414 ERD6 (EARLY RESPONSE TO DEHYDRATION 6) encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. O.I. H.G. S.X.
0.30 32.1 0.78 At5g23490 832415 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. H.G. S.X.
0.29 30.3 0.77 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA O.I. H.G. S.X.
0.27 26.2 0.76 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.65	79.6	1.00	At1g19380	838521	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.68	82.2	0.80	At4g39640	830118	GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.	O.I.	H.G.	S.X.
0.68	82.2	0.80	At1g55450	841992	embryo-abundant protein-related	F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA	O.I.	H.G.	S.X.
0.61	76.7	0.77	At4g36500	829802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.59	74.7	0.77	At3g09830	820141	protein kinase, putative	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.56	73.0	0.77	At4g12720	826884	NUDT7	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	O.I.	H.G.	S.X.
0.55	70.6	0.77	At5g35735	833550	auxin-responsive family protein	F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB	O.I.	H.G.	S.X.
0.54	69.5	0.80	At1g57980	842165	purine permease-related	F:purine transmembrane transporter activity;P:unknown;C:unknown;PBO	O.I.	H.G.	S.X.
0.52	67.4	0.76	At1g07000	837210	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	H.G.	S.X.
0.52	67.4	0.81	At3g59080	825077	aspartyl protease family protein	F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	H.G.	S.X.
0.50	65.3	0.78	At1g29690	839846	CAD1 (constitutively activated cell death 1)	Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.	O.I.	H.G.	S.X.
0.50	65.3	0.80	At2g41100	818709	TCH3 (TOUCH 3)	encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.	O.I.	H.G.	S.X.
0.49	63.5	0.79	At1g28380	839735	NSL1 (necrotic spotted lesions 1)	This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.	O.I.	H.G.	S.X.
0.49	63.5	0.74	At3g52400	824405	SYP122 (SYNTAXIN OF PLANTS 122)	syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway	O.I.	H.G.	S.X.
0.48	62.5	0.81	At5g13190	831158	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.47	61.2	0.73	At4g34390	829589	XLG2 (extra-large GTP-binding protein 2)	F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB	O.I.	H.G.	S.X.
0.44	57.2	0.77	At1g07135	837224	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA	O.I.	H.G.	S.X.
0.43	55.3	0.77	At5g44070	834430	CAD1 (CADMIUM SENSITIVE 1)	Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.	O.I.	H.G.	S.X.
0.43	55.3	0.75	At4g14365	827080	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA	O.I.	H.G.	S.X.
0.43	55.3	0.74	At4g20830	827831	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall;FBPOAM	O.I.	H.G.	S.X.
0.42	53.9	0.75	At4g33050	829442	EDA39 (embryo sac development arrest 39)	F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO	O.I.	H.G.	S.X.
0.41	52.4	0.73	At5g06320	830520	NHL3	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.	O.I.	H.G.	S.X.
0.40	50.8	0.81	At3g11820	820355	SYP121 (SYNTAXIN OF PLANTS 121)	Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.	O.I.	H.G.	S.X.
0.39	48.4	0.81	At3g26980	822315	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PF	O.I.	H.G.	S.X.
0.38	46.7	0.74	At5g66210	836753	CPK28	member of Calcium Dependent Protein Kinase	O.I.	H.G.	S.X.
0.37	45.0	0.75	At4g31550	829282	WRKY11	member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.	O.I.	H.G.	S.X.
0.36	43.6	0.84	At1g35350	840424	-	F:unknown;P:unknown;C:integral to membrane;FMPOB	O.I.	H.G.	S.X.
0.36	43.6	0.73	At1g27770	839670	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	O.I.	H.G.	S.X.
0.34	39.8	0.77	At5g26030	832672	FC1 (ferrochelatase 1)	encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins	O.I.	H.G.	S.X.
0.33	38.1	0.76	At1g19770	838565	ATPUP14	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	H.G.	S.X.
0.32	35.7	0.73	At1g20510	838639	OPCL1 (OPC-8:0 COA LIGASE1)	F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV	O.I.	H.G.	S.X.
0.30	32.1	0.82	At1g08930	837414	ERD6 (EARLY RESPONSE TO DEHYDRATION 6)	encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.	O.I.	H.G.	S.X.
0.30	32.1	0.78	At5g23490	832415	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	H.G.	S.X.
0.29	30.3	0.77	At4g38550	830012	-	F:unknown;P:unknown;C:chloroplast;MFPOBVA	O.I.	H.G.	S.X.
0.27	26.2	0.76	At2g23320	816864	WRKY15	Encodes WRKY DNA-binding protein 15 (WRKY15).	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.3 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.1 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.8 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.1 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.6 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.5 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.5 99.8 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
42.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.0 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.5 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.1 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.7 99.8 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
38.7 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.9 99.7 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
36.4 99.7 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.3 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.4 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.6 99.7 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
25.8 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.1 99.6 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
24.7 99.6 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.5 99.6 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
21.1 99.6 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.8 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.6 99.5 GSM244454 Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
18.0 99.5 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
17.8 99.5 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.6 99.5 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.0 99.5 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
15.1 99.4 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.1 99.4 GSM244452 Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
12.1 99.3 E-ATMX-31-raw-cel-1516947882
12.1 99.3 E-ATMX-31-raw-cel-1516947916
11.5 99.3 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
10.8 99.2 E-ATMX-31-raw-cel-1516947899
10.4 99.2 E-MEXP-807-raw-cel-1173273144
10.0 99.2 GSM244450 Arabidopsis AtMYB30-ox_T0 (not inoculated)_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.9 99.1 E-MEXP-807-raw-cel-1173273252
8.7 99.0 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.6 99.0 E-MEXP-546-raw-cel-863289424

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
58.3	99.8	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.1	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
52.8	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
49.1	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.6	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.5	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.4	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.6	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.5	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.5	99.8	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
42.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.0	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.5	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.1	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.9	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.7	99.8	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
38.7	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.9	99.7	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
36.4	99.7	GSM133757	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.3	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.4	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
27.6	99.7	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
25.8	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.1	99.6	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
24.7	99.6	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.5	99.6	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
21.1	99.6	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.8	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.6	99.5	GSM244454	Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
18.0	99.5	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
17.8	99.5	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.6	99.5	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.0	99.5	GSM244455	Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
15.1	99.4	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.1	99.4	GSM244452	Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
12.1	99.3	E-ATMX-31-raw-cel-1516947882
12.1	99.3	E-ATMX-31-raw-cel-1516947916
11.5	99.3	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM189112	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1	GSE7796	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
10.8	99.2	E-ATMX-31-raw-cel-1516947899
10.4	99.2	E-MEXP-807-raw-cel-1173273144
10.0	99.2	GSM244450	Arabidopsis AtMYB30-ox_T0 (not inoculated)_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.9	99.1	E-MEXP-807-raw-cel-1173273252
8.7	99.0	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.6	99.0	E-MEXP-546-raw-cel-863289424

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.108 2 GO:0051245 Any process that stops, prevents, or reduces the rate of the cellular defense response.
0.105 2 GO:0010363 Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.
0.103 2 GO:0006612 The process of directing proteins towards a membrane, usually using signals contained within the protein.

SF	Genes	GO ID	Process Name
0.108	2	GO:0051245	Any process that stops, prevents, or reduces the rate of the cellular defense response.
0.105	2	GO:0010363	Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.
0.103	2	GO:0006612	The process of directing proteins towards a membrane, usually using signals contained within the protein.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.051 1 00430 Taurine and hypotaurine metabolism
0.048 2 04130 SNARE interactions in vesicular transport
0.045 1 00590 Arachidonic acid metabolism

SF	Genes	KEGG ID	Pathway name
0.051	1	00430	Taurine and hypotaurine metabolism
0.048	2	04130	SNARE interactions in vesicular transport
0.045	1	00590	Arachidonic acid metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g19380
Gene name	unknown protein
Module size	35 genes
NF	0.44
%ile	62.4

Co-expression analysis

Gene ID At1g19380 Gene name unknown protein Module size 35 genes NF 0.44 %ile 62.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.051100430Taurine and hypotaurine metabolism0.048204130SNARE interactions in vesicular transport0.045100590Arachidonic acid metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g19380

Gene name unknown protein

Module size 35 genes

NF 0.44

%ile 62.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.051 1 00430 Taurine and hypotaurine metabolism
0.048 2 04130 SNARE interactions in vesicular transport
0.045 1 00590 Arachidonic acid metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays