Co-expression analysis

Gene ID At1g19230
Gene name respiratory burst oxidase protein E (RbohE) / NADPH oxidase
Module size 8 genes
NF 0.43
%ile 60.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2522.61.00At1g19230838506respiratory burst oxidase protein E (RbohE) / NADPH oxidaseF:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOAO.I.H.G.S.X.
0.6781.60.73At2g01580814687unknown proteinF:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.6781.60.74At2g40370818630LAC5 (laccase 5)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.H.G.S.X.
0.6781.60.71At5g16770831540AtMYB9 (myb domain protein 9)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.5673.00.73At3g04370819592PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.O.I.H.G.S.X.
0.4761.20.77At2g37360818312ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.H.G.S.X.
0.3948.40.73At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.H.G.S.X.
0.3235.70.75At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
125.499.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
117.299.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
87.599.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
78.299.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
65.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
57.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.599.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
54.399.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.199.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
48.799.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.099.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
47.399.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.599.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.099.8GSM142885CW001_ATH1_A1.4-WestC-kubGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutantsLink to GEO
44.299.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.699.8GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
38.299.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.699.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.099.7GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
25.899.7GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.999.6GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
21.199.6GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
21.199.6GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
19.799.6GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
19.399.6GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
19.099.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.799.5GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
14.799.4GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
14.699.4E-TABM-18-raw-cel-489542751
14.199.4GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
14.199.4E-ATMX-33-raw-cel-1562596197
13.899.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.299.4E-TABM-52-raw-cel-1583683598
12.899.3E-TABM-18-raw-cel-489542783
12.899.3GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
12.699.3E-MEXP-637-raw-cel-913039056
12.499.3E-MEXP-828-raw-cel-1156922296
12.299.3E-TABM-18-raw-cel-489543037
12.199.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.899.3GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
11.899.3GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
11.799.3GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.199.2GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
10.899.2E-TABM-18-raw-cel-489543085
10.499.2E-TABM-18-raw-cel-489543154
10.499.2E-MEXP-828-raw-cel-1156922455
10.399.2E-MEXP-828-raw-cel-1156922509
10.299.2GSM142883CW001_ATH1_A1.2-WestC-wsbGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutantsLink to GEO
10.299.2E-TABM-18-raw-cel-489543121
10.299.2E-MEXP-828-raw-cel-1156922485
10.199.2E-TABM-52-raw-cel-1583683342
10.099.2GSM131304AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
9.999.1E-TABM-18-raw-cel-489543105
9.999.1E-MEXP-828-raw-cel-1156922368
9.999.1GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
9.999.1E-TABM-18-raw-cel-489542955
9.899.1GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.799.1E-TABM-18-raw-cel-489543542
9.599.1E-TABM-18-raw-cel-489542857
9.599.1E-MEXP-637-raw-cel-913039032
9.499.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.499.1E-MEXP-637-raw-cel-913039258
9.499.1GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.099.1E-TABM-18-raw-cel-489542701
8.999.0E-TABM-52-raw-cel-1583683182
8.899.0E-MEXP-635-raw-cel-912819888
8.899.0E-ATMX-1-raw-cel-1112746267
8.899.0E-MEXP-635-raw-cel-912819872

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0010345The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols.Link to AmiGO
0.0951GO:0046274The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.Link to AmiGO
0.0771GO:0046688A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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