Co-expression analysis

Gene ID At1g18890
Gene name ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1)
Module size 12 genes
NF 0.42
%ile 58.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.3338.11.00At1g18890838470ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1)encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.O.I.H.G.S.X.
0.5368.60.92At5g61210836242SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formationO.I.H.G.S.X.
0.5065.30.86At1g08930837414ERD6 (EARLY RESPONSE TO DEHYDRATION 6)encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.O.I.H.G.S.X.
0.5065.30.87At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.H.G.S.X.
0.4659.80.87At2g37940818371-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.4457.20.86At2g40270818619protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.4355.30.87At5g02290831880NAKEncodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.O.I.H.G.S.X.
0.4152.40.89At4g25030828606unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO.I.H.G.S.X.
0.4050.80.85At1g59870842281PEN3 (PENETRATION 3)ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.O.I.H.G.S.X.
0.3948.40.88At4g35600829712CONNEXIN 32plant-type connexin (gap junction-type protein), a component of plasmodesmataO.I.H.G.S.X.
0.3643.60.88At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.3338.10.86At2g44490819056PEN2 (PENETRATION 2)Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.899.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.699.7GSM231201chl1 at T0, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
29.699.7GSM231195wild-type at T0, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
28.299.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.299.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.299.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.799.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.399.6GSM231204chl1 at T0.5, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
18.599.5GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.299.5E-MEXP-1138-raw-cel-1432773322
17.799.5GSM231198wild-type at T0.5, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
17.699.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.199.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.199.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.099.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.899.5GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.799.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.699.5GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
16.499.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.299.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.199.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5E-MEXP-1138-raw-cel-1432773258
15.999.5GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
15.899.5E-MEXP-1138-raw-cel-1432773034
15.699.5GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
15.399.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.199.4E-MEXP-1138-raw-cel-1432772522
14.999.4GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.899.4E-MEXP-1138-raw-cel-1432773162
14.899.4E-MEXP-1138-raw-cel-1432773354
14.799.4GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.599.4E-MEXP-1138-raw-cel-1432773290
14.499.4E-MEXP-1138-raw-cel-1432772618
14.399.4E-MEXP-1138-raw-cel-1432773386
14.299.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
14.299.4E-MEXP-1138-raw-cel-1432772650
14.299.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.299.4E-MEXP-1138-raw-cel-1432772554
14.099.4E-MEXP-1138-raw-cel-1432773066
14.099.4E-MEXP-1138-raw-cel-1432772586
14.099.4GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.799.4GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
13.799.4E-MEXP-1138-raw-cel-1432772970
13.699.4GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
13.699.4E-MEXP-1138-raw-cel-1432772682
13.599.4E-MEXP-883-raw-cel-1697709994
13.399.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.399.4E-MEXP-1138-raw-cel-1432773130
13.399.4E-MEXP-883-raw-cel-1697709938
13.299.4E-MEXP-1138-raw-cel-1432772778
13.299.4GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.999.3E-MEXP-1138-raw-cel-1432773194
12.999.3E-MEXP-1138-raw-cel-1432773098
12.699.3GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.599.3E-MEXP-1138-raw-cel-1432772938
12.599.3GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.399.3GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.399.3E-MEXP-1138-raw-cel-1432772714
12.399.3GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
12.099.3E-ATMX-35-raw-cel-1574334864
12.099.3GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.999.3GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
11.999.3E-MEXP-1138-raw-cel-1432773226
11.899.3E-MEXP-1138-raw-cel-1432772842
11.899.3GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.799.3E-MEXP-1138-raw-cel-1432773002
11.699.3GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.599.3E-MEXP-883-raw-cel-1697709954
11.399.3E-MEXP-1138-raw-cel-1432772906
11.399.3GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.299.2GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.299.2GSM131160AtGen_C-10_1-Pi-6_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
11.299.2GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.199.2GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.999.2GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.799.2E-MEXP-1138-raw-cel-1432772810
10.599.2E-ATMX-35-raw-cel-1574334848
10.599.2E-MEXP-1138-raw-cel-1432772746
10.399.2E-ATMX-35-raw-cel-1574334880
10.199.2GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.099.2E-MEXP-1138-raw-cel-1432772874
9.699.1E-MEXP-285-raw-cel-440782725
9.599.1GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.399.1GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.299.1E-MEXP-285-raw-cel-440782791
9.199.1GSM131162AtGen_C-12_3-Pi-6_REP3_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
9.199.1GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.899.0GSM106969opr3_OPDA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
8.899.0GSM106915opr3_JA_22 hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
8.799.0GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2672GO:0042344The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.Link to AmiGO
0.1542GO:0031348Any process that stops, prevents or reduces the frequency, rate or extent of a defense response.Link to AmiGO
0.1431GO:0051245Any process that stops, prevents, or reduces the rate of the cellular defense response.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.067204130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.041100380Tryptophan metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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