Co-expression analysis

Gene ID At1g18390
Gene name ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase
Module size 6 genes
NF 0.26
%ile 29.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g18390838420ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.8391.40.87At4g11850826791PLDGAMMA1phospholipase D (gamma)O.I.H.G.S.X.
0.7385.50.93At1g18380--O.I.H.G.S.X.
0.4761.20.87At1g03740839423ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.H.G.S.X.
0.4457.20.88At2g02220814753PSKR1 (PHYTOSULFOKIN RECEPTOR 1)Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).O.I.H.G.S.X.
0.061.40.88At3g21630821717CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.599.0GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
7.398.8GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
5.698.4E-MEXP-849-raw-cel-1181981046
5.598.3E-MEXP-849-raw-cel-1181980998
5.598.3GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
5.498.3GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
5.298.2GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
5.298.2GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
4.798.0E-MEXP-849-raw-cel-1181980982
4.697.9GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
4.697.9GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0032491The series of events in which a stimulus from a molecule of fungal origin is received and converted into a molecular signal.Link to AmiGO
0.0631GO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.Link to AmiGO
0.0631GO:0009817A response of an organism to a fungus that prevents the occurrence or spread of disease.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.100100565Ether lipid metabolismLink to KEGG PATHWAY
0.056100564Glycerophospholipid metabolismLink to KEGG PATHWAY
0.028104144EndocytosisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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