Co-expression analysis

Gene ID At1g15260
Gene name unknown protein
Module size 54 genes
NF 0.21
%ile 19.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g15260838093unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3846.70.81At4g36540829806BEE2 (BR Enhanced Expression 2)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOO.I.H.G.S.X.
0.3745.00.83At4g14540827101NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOBO.I.H.G.S.X.
0.3338.10.84At1g26220839163GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BOPAO.I.H.G.S.X.
0.3133.80.83At2g03750814902sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBFO.I.H.G.S.X.
0.3133.80.81At1g27480839639lecithin:cholesterol acyltransferase family protein / LACT family proteinF:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:plasma membrane, vacuole;MPOBO.I.H.G.S.X.
0.2930.30.82At5g41050834107unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2830.30.82At4g15545827228unknown proteinF:unknown;P:unknown;C:unknown;MOBPFVO.I.H.G.S.X.
0.2624.40.81At3g09050820058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAFO.I.H.G.S.X.
0.2624.40.81At1g16880838259uridylyltransferase-relatedF:unknown;P:response to cold;C:chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope;PBOO.I.H.G.S.X.
0.2624.40.80At1g05385837040photosystem II 11 kDa protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.2522.60.82At3g23700821951S1 RNA-binding domain-containing proteinF:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFAO.I.H.G.S.X.
0.2522.60.81At5g02120831799OHP (ONE HELIX PROTEIN)Encodes a one helix protein homologous to cyanobacterial high-light inducible proteins. The protein is localized to the thylakoid membrane and its transcript is transiently induced by exposure to high light conditions.O.I.H.G.S.X.
0.2420.70.81At4g14890827146ferredoxin family proteinF:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFVO.I.H.G.S.X.
0.2420.70.81At1g14345837996oxidoreductaseF:oxidoreductase activity;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, membrane;OBPO.I.H.G.S.X.
0.2420.70.82At1g54500841892rubredoxin family proteinF:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAPO.I.H.G.S.X.
0.2319.30.83At3g15900820833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.2319.30.80At5g58260835938-Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.O.I.H.G.S.X.
0.2319.30.81At1g18170838396immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPFO.I.H.G.S.X.
0.2319.30.87At5g15310831383ATMYB16 (MYB DOMAIN PROTEIN 16)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.2217.50.81At5g53580835440aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.2217.50.81At1g32060840098PRK (PHOSPHORIBULOKINASE)F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAVO.I.H.G.S.X.
0.2217.50.80At4g30993829225unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2217.50.82At5g17230831587phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseEncodes phytoene synthase.O.I.H.G.S.X.
0.2115.80.81At1g35340840423ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;BOPFMO.I.H.G.S.X.
0.2115.80.81At4g26520828758fructose-bisphosphate aldolase, cytoplasmicF:fructose-bisphosphate aldolase activity;P:pentose-phosphate shunt, response to hypoxia;C:unknown;OMBPFO.I.H.G.S.X.
0.2014.40.81At5g21100832234L-ascorbate oxidase, putativeF:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOAO.I.H.G.S.X.
0.2014.40.80At1g44920841058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAOO.I.H.G.S.X.
0.2014.40.81At1g32470840141glycine cleavage system H protein, mitochondrial, putativeF:glycine dehydrogenase (decarboxylating) activity;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex, chloroplast;BOPMFAO.I.H.G.S.X.
0.2014.40.80At5g58330835945malate dehydrogenase (NADP), chloroplast, putativeF:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFAO.I.H.G.S.X.
0.1912.70.81At2g35370818104GDCHEncodes glycine decarboxylase complex H protein. Involved in photorespiration.O.I.H.G.S.X.
0.1912.70.80At2g34860818051EDA3 (embryo sac development arrest 3)F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMFO.I.H.G.S.X.
0.1811.40.81At4g38770830032PRP4 (PROLINE-RICH PROTEIN 4)Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.O.I.H.G.S.X.
0.1811.40.82At1g54820841921protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.H.G.S.X.
0.1811.40.81At4g35760829729-F:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.1811.40.85At5g57030835806LUT2 (LUTEIN DEFICIENT 2)Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclaseO.I.H.G.S.X.
0.1811.40.81At4g25080828611CHLM (magnesium-protoporphyrin IX methyltransferase)Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.O.I.H.G.S.X.
0.1811.40.81At4g20760827824short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.1811.40.81At3g10840820253hydrolase, alpha/beta fold family proteinF:hydrolase activity, catalytic activity;P:unknown;C:chloroplast envelope;BOMPFAVO.I.H.G.S.X.
0.1710.20.85At4g37080829862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFO.I.H.G.S.X.
0.1710.20.81At5g51540835228metalloendopeptidaseF:metalloendopeptidase activity;P:proteolysis;C:chloroplast thylakoid membrane, chloroplast;BOFMPAO.I.H.G.S.X.
0.1710.20.80At5g52100835286crr1 (chlororespiration reduction 1)Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex.O.I.H.G.S.X.
0.168.80.81At1g75350843871emb2184 (embryo defective 2184)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.H.G.S.X.
0.168.80.81At5g47840834835AMK2 (Adenosine monophosphate kinase)F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPAO.I.H.G.S.X.
0.168.80.87At2g26910817232PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPVO.I.H.G.S.X.
0.168.80.80At1g44575841033NPQ4 (NONPHOTOCHEMICAL QUENCHING)Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.O.I.H.G.S.X.
0.157.80.81At1g54780841919thylakoid lumen 18.3 kDa proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BPOMO.I.H.G.S.X.
0.157.80.81At3g27830822403RPL12-A (RIBOSOMAL PROTEIN L12-A)50S ribosomal protein L12-AO.I.H.G.S.X.
0.157.80.84At3g61550825328zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.H.G.S.X.
0.146.80.82At3g20820821630leucine-rich repeat family proteinF:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFAO.I.H.G.S.X.
0.146.80.81At1g60950842386FED Aencodes a major leaf ferredoxinO.I.H.G.S.X.
0.146.80.82At3g04760819636pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.135.80.81At5g49970835061ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)encodes the bifunctional pyridoxine (pyridoxamine) 5-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)O.I.H.G.S.X.
0.071.90.80At2g33255817888catalytic/ hydrolase/ phosphoglycolate phosphataseF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast;BOAFPMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.599.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
63.099.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
59.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
58.299.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
47.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.399.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.599.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.699.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.299.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.699.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.599.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.599.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.399.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.199.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.899.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.299.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.399.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.799.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.299.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.399.6GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
18.199.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.699.4GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.199.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.399.3E-MEXP-1443-raw-cel-1581869515
10.699.2GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.799.0GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0602GO:0016117The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.Link to AmiGO
0.0361GO:0042817The chemical reactions and pathways involving 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.Link to AmiGO
0.0351GO:0010258The aggregation, arrangement and bonding together of a set of components to form NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.053200906Carotenoid biosynthesisLink to KEGG PATHWAY
0.047300195PhotosynthesisLink to KEGG PATHWAY
0.047300710Carbon fixation in photosynthetic organismsLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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