Co-expression analysis

Gene ID At1g14890
Gene name enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor
Module size 50 genes
NF 0.11
%ile 7.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g14890838054enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3338.10.75At1g45976841106SBP1 (s-ribonuclease binding protein 1)F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFBO.I.H.G.S.X.
0.3235.70.73At5g60200836142Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POO.I.H.G.S.X.
0.2930.30.74At5g24010832466protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.2930.30.74At5g21105832235L-ascorbate oxidase/ copper ion binding / oxidoreductaseF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOAO.I.H.G.S.X.
0.2624.40.74At5g25170832588unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFO.I.H.G.S.X.
0.2522.60.72At3g53540824522unknown proteinF:unknown;P:unknown;C:plasma membrane;OMBFPAVO.I.H.G.S.X.
0.2522.60.73At2g38800818462calmodulin-binding protein-relatedF:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVAO.I.H.G.S.X.
0.2217.50.73At2g28660817415copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBFO.I.H.G.S.X.
0.2014.40.76At2g03890814915phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.1912.70.71At3g53610824529ATRAB8GTPase AtRAB8 (atrab8)O.I.H.G.S.X.
0.1811.40.70At4g12110826819SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.O.I.H.G.S.X.
0.1811.40.71At5g25150832586TAF5 (TBP-ASSOCIATED FACTOR 5)Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).O.I.H.G.S.X.
0.1710.20.71At5g25270832599-F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVPO.I.H.G.S.X.
0.168.80.73At2g01820814713leucine-rich repeat protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:pollen development;C:plasma membrane, plant-type cell wall;MPOBFVAO.I.H.G.S.X.
0.168.80.73At2g07360815305SH3 domain-containing proteinF:binding;P:unknown;C:cytosol, nucleus, plasma membrane, membrane;OPMFBO.I.H.G.S.X.
0.157.80.72At1g26665839207-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.157.80.71At2g40640818659-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.146.80.70At4g26620828769sucrase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAO.I.H.G.S.X.
0.135.80.71At3g04350819590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBOO.I.H.G.S.X.
0.135.80.71At3g54030824570protein kinase family proteinF:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVAO.I.H.G.S.X.
0.135.80.71At5g16120831469hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.H.G.S.X.
0.135.80.71At2g20850816618SRF1 (strubbelig receptor family 1)F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.135.80.73At5g20520832174WAV2 (WAVY GROWTH 2)Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).O.I.H.G.S.X.
0.135.80.71At1g43700840957VIP1 (VIRE2-INTERACTING PROTEIN 1)Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.O.I.H.G.S.X.
0.124.90.73At3g22440821815hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.H.G.S.X.
0.114.10.74At2g01710814700DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAVO.I.H.G.S.X.
0.114.10.72At2g45620819170nucleotidyltransferase family proteinF:nucleotidyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.103.40.71At5g46700834713TRN2 (TORNADO 2)Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.O.I.H.G.S.X.
0.103.40.71At2g17520816258IRE1AEncodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.O.I.H.G.S.X.
0.103.40.72At4g02590828126UNE12 (unfertilized embryo sac 12)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO.I.H.G.S.X.
0.103.40.71At3g52240824389unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.H.G.S.X.
0.103.40.71At1g34300840330lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.103.40.72At1g78150844151unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO.I.H.G.S.X.
0.092.80.71At1g62880842589cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.082.30.73At1g51160841539synbindin, putativeF:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:cis-Golgi network;MFOPO.I.H.G.S.X.
0.071.90.72At5g64340836555SAC51 (SUPPRESSOR OF ACAULIS 51)Encodes a bHLH(basic helix-loop-helix)-type transcription factor SAC51 [suppressor of acaulis 51]. Upregulation of SAC51 reverses the dwarf phenotype caused by a loss-of-function mutation in ACL5 (Arabidopsis thaliana ACAULIS 5) gene, suggesting that activation of SAC51 may lead to the expression of a subset of genes required for stem elongation.O.I.H.G.S.X.
0.071.90.72At4g14900827147hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBVO.I.H.G.S.X.
0.071.90.71At2g15900816086phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.071.90.71At4g27000828808ATRBP45CF:RNA binding;P:unknown;C:unknown;MPFOBAVO.I.H.G.S.X.
0.061.40.71At3g01300820989protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.061.40.71At4g18710827605BIN2 (BRASSINOSTEROID-INSENSITIVE 2)ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.O.I.H.G.S.X.
0.061.40.71At1g08210837342aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane, plant-type cell wall;MPFOO.I.H.G.S.X.
0.061.40.71At3g17590821025BSH (BUSHY GROWTH)Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.O.I.H.G.S.X.
0.051.10.71At1g23860838997RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.O.I.H.G.S.X.
0.051.10.72At1g51730841598RWD domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.040.90.71At5g59950836117RNA and export factor-binding protein, putativeF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBVAO.I.H.G.S.X.
0.040.90.71At1g36980840608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.040.90.71At2g44680819076CKB4 (CASEIN KINASE II BETA SUBUNIT 4)Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.O.I.H.G.S.X.
0.020.40.71At1g27690839661unknown proteinF:molecular_function unknown;P:glycerol biosynthetic process;C:unknown;PBO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.899.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.599.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.699.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
41.699.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.799.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.199.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.199.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.099.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.499.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.999.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.599.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.999.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.999.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.699.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.099.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
24.299.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.099.6E-MEXP-1138-raw-cel-1432773258
18.799.5E-MEXP-1138-raw-cel-1432773290
18.699.5E-MEXP-1138-raw-cel-1432773322
17.299.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.199.5GSM31920735S-MIF1 line#127, dark grownGSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
14.299.4GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.099.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.499.4GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.099.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
12.599.3GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.199.3GSM31920535S-MIF1 line #124, dark grown, replicate1GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
12.199.3GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.099.3GSM31919635S-MIF1 line#127, light grownGSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
11.299.2GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
10.999.2GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.999.1E-ATMX-35-raw-cel-1574334800
9.899.1GSM31920635S-MIF1 line #124, dark grown, replicate2GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
9.699.1GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.399.1GSM106916opr3_JA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.199.1GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.799.0GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0391GO:0006987The conversion of a specific protein, possessing protein kinase and endoribonuclease activities, to an active form as a result of signaling via the unfolded protein response.Link to AmiGO
0.0391GO:0046827Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm.Link to AmiGO
0.0381GO:0009729The series of events in which a brassinosteroid stimulus is received by a cell and converted into a molecular signal.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025104712Circadian rhythm - plantLink to KEGG PATHWAY
0.024103022Basal transcription factorsLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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