CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g14400

Gene name UBC1 (UBIQUITIN CARRIER PROTEIN 1)

Module size 5 genes

NF 0.32

%ile 41.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.40 50.8 1.00 At1g14400 838002 UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin carrier protein O.I. H.G. S.X.
0.67 81.6 0.93 At3g20310 821575 ERF7 (ETHYLINE RESPONSE FACTOR 7) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box–mediated transcription together with AtSin3 and HDA19. O.I. H.G. S.X.
0.35 41.6 0.96 At2g28370 817385 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. H.G. S.X.
0.35 41.6 0.93 At5g65430 836668 GRF8 (GENERAL REGULATORY FACTOR 8) member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.
0.20 14.4 0.93 At5g10860 830953 CBS domain-containing protein F:unknown;P:response to salt stress;C:mitochondrion;BOAPFM O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.40	50.8	1.00	At1g14400	838002	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	ubiquitin carrier protein	O.I.	H.G.	S.X.
0.67	81.6	0.93	At3g20310	821575	ERF7 (ETHYLINE RESPONSE FACTOR 7)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box–mediated transcription together with AtSin3 and HDA19.	O.I.	H.G.	S.X.
0.35	41.6	0.96	At2g28370	817385	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	H.G.	S.X.
0.35	41.6	0.93	At5g65430	836668	GRF8 (GENERAL REGULATORY FACTOR 8)	member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	O.I.	H.G.	S.X.
0.20	14.4	0.93	At5g10860	830953	CBS domain-containing protein	F:unknown;P:response to salt stress;C:mitochondrion;BOAPFM	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
296.4 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
190.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
173.2 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
148.0 99.9 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
88.4 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.9 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.0 99.9 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
76.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
70.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.4 99.9 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
67.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.3 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
62.7 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
61.1 99.8 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
59.7 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.5 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
58.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.6 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.8 99.8 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
54.5 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.7 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.4 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.1 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.2 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.3 99.8 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
42.8 99.8 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
41.1 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.3 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
38.1 99.8 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
37.3 99.7 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
36.7 99.7 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
35.2 99.7 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.0 99.7 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
33.5 99.7 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.1 99.7 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.6 99.7 E-MEXP-1138-raw-cel-1432772906
30.5 99.7 E-MEXP-1138-raw-cel-1432772874
28.8 99.7 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.6 99.7 E-MEXP-1138-raw-cel-1432772842
27.1 99.7 E-MEXP-1138-raw-cel-1432772586
26.9 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.9 99.7 E-MEXP-1138-raw-cel-1432772650
26.7 99.7 E-MEXP-1138-raw-cel-1432772938
26.5 99.7 E-MEXP-1138-raw-cel-1432773002
25.0 99.6 E-MEXP-1138-raw-cel-1432772810
24.6 99.6 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
24.5 99.6 E-MEXP-1138-raw-cel-1432772618
23.4 99.6 E-MEXP-1138-raw-cel-1432772682
22.9 99.6 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
22.8 99.6 E-ATMX-31-raw-cel-1516948018
22.6 99.6 E-MEXP-1138-raw-cel-1432772554
22.4 99.6 E-MEXP-1138-raw-cel-1432772778
22.2 99.6 E-MEXP-1138-raw-cel-1432773130
21.1 99.6 E-ATMX-35-raw-cel-1574334880
20.8 99.6 E-MEXP-1138-raw-cel-1432773034
20.7 99.6 E-MEXP-1138-raw-cel-1432772522
20.6 99.6 E-MEXP-1138-raw-cel-1432772746
20.5 99.6 E-MEXP-1138-raw-cel-1432772714
19.9 99.6 E-MEXP-285-raw-cel-440782791
19.7 99.6 E-MEXP-1138-raw-cel-1432772970
19.5 99.6 E-ATMX-35-raw-cel-1574334864
19.5 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
19.2 99.6 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
19.2 99.6 E-MEXP-285-raw-cel-440782725
19.1 99.6 E-MEXP-1138-raw-cel-1432773066
18.7 99.5 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.6 99.5 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
18.4 99.5 E-MEXP-1138-raw-cel-1432773194
17.9 99.5 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.3 99.5 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0 99.5 E-MEXP-1138-raw-cel-1432773226
16.8 99.5 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
16.8 99.5 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.6 99.5 E-MEXP-1138-raw-cel-1432773162
16.1 99.5 E-MEXP-1138-raw-cel-1432773098
16.0 99.5 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.9 99.5 E-MEXP-509-raw-cel-829148561
15.6 99.5 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.4 99.5 E-MEXP-1138-raw-cel-1432773322
15.3 99.4 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
15.2 99.4 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.1 99.4 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.8 99.4 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
14.8 99.4 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.6 99.4 E-MEXP-1138-raw-cel-1432773258
14.1 99.4 E-MEXP-1138-raw-cel-1432773354
13.7 99.4 E-MEXP-1138-raw-cel-1432773386
13.4 99.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
12.9 99.3 E-MEXP-1138-raw-cel-1432773290
12.2 99.3 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.1 99.3 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.1 99.3 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3 99.3 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.0 99.2 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.7 99.2 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7 99.2 E-MEXP-509-raw-cel-829148348
10.3 99.2 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
10.1 99.2 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.9 99.1 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
9.6 99.1 E-ATMX-31-raw-cel-1516947984
8.8 99.0 E-MEXP-509-raw-cel-829148456

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
296.4	100.0	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
190.8	100.0	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
173.2	100.0	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
148.0	99.9	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
88.4	99.9	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.9	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.0	99.9	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
76.1	99.9	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.2	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
70.1	99.9	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.4	99.9	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
67.8	99.9	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.0	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.3	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.0	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.3	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
62.7	99.8	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
61.1	99.8	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
59.7	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.5	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
58.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.6	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.8	99.8	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
54.5	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.7	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.4	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.1	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.2	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.3	99.8	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
42.8	99.8	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
41.1	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.3	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
38.1	99.8	GSM142661	MB002_ATH1_A1-Eland-ch1	GSE6153	Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
37.3	99.7	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
36.7	99.7	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
35.2	99.7	GSM142629	MC002_ATH1_A3.1-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.0	99.7	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
33.5	99.7	GSM142623	MC002_ATH1_A1.1-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.1	99.7	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.6	99.7	E-MEXP-1138-raw-cel-1432772906
30.5	99.7	E-MEXP-1138-raw-cel-1432772874
28.8	99.7	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.6	99.7	E-MEXP-1138-raw-cel-1432772842
27.1	99.7	E-MEXP-1138-raw-cel-1432772586
26.9	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.9	99.7	E-MEXP-1138-raw-cel-1432772650
26.7	99.7	E-MEXP-1138-raw-cel-1432772938
26.5	99.7	E-MEXP-1138-raw-cel-1432773002
25.0	99.6	E-MEXP-1138-raw-cel-1432772810
24.6	99.6	GSM184922	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
24.5	99.6	E-MEXP-1138-raw-cel-1432772618
23.4	99.6	E-MEXP-1138-raw-cel-1432772682
22.9	99.6	GSM142662	MB002_ATH1_A2-Eland-ch2	GSE6153	Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
22.8	99.6	E-ATMX-31-raw-cel-1516948018
22.6	99.6	E-MEXP-1138-raw-cel-1432772554
22.4	99.6	E-MEXP-1138-raw-cel-1432772778
22.2	99.6	E-MEXP-1138-raw-cel-1432773130
21.1	99.6	E-ATMX-35-raw-cel-1574334880
20.8	99.6	E-MEXP-1138-raw-cel-1432773034
20.7	99.6	E-MEXP-1138-raw-cel-1432772522
20.6	99.6	E-MEXP-1138-raw-cel-1432772746
20.5	99.6	E-MEXP-1138-raw-cel-1432772714
19.9	99.6	E-MEXP-285-raw-cel-440782791
19.7	99.6	E-MEXP-1138-raw-cel-1432772970
19.5	99.6	E-ATMX-35-raw-cel-1574334864
19.5	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
19.2	99.6	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
19.2	99.6	E-MEXP-285-raw-cel-440782725
19.1	99.6	E-MEXP-1138-raw-cel-1432773066
18.7	99.5	GSM142630	MC002_ATH1_A3.2-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.6	99.5	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
18.4	99.5	E-MEXP-1138-raw-cel-1432773194
17.9	99.5	GSM142655	MC002_ATH1_A11.3-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.3	99.5	GSM142653	MC002_ATH1_A11.1-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0	99.5	E-MEXP-1138-raw-cel-1432773226
16.8	99.5	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
16.8	99.5	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.6	99.5	E-MEXP-1138-raw-cel-1432773162
16.1	99.5	E-MEXP-1138-raw-cel-1432773098
16.0	99.5	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.9	99.5	E-MEXP-509-raw-cel-829148561
15.6	99.5	GSM142654	MC002_ATH1_A11.2-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.4	99.5	E-MEXP-1138-raw-cel-1432773322
15.3	99.4	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
15.2	99.4	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.1	99.4	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.8	99.4	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
14.8	99.4	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.6	99.4	E-MEXP-1138-raw-cel-1432773258
14.1	99.4	E-MEXP-1138-raw-cel-1432773354
13.7	99.4	E-MEXP-1138-raw-cel-1432773386
13.4	99.4	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
12.9	99.3	E-MEXP-1138-raw-cel-1432773290
12.2	99.3	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.1	99.3	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.1	99.3	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3	99.3	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
11.0	99.2	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.7	99.2	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7	99.2	E-MEXP-509-raw-cel-829148348
10.3	99.2	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
10.1	99.2	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
9.9	99.1	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
9.6	99.1	E-ATMX-31-raw-cel-1516947984
8.8	99.0	E-MEXP-509-raw-cel-829148456

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0033523 The modification of histone H2B by addition of ubiquitin groups.
0.065 1 GO:0009742 A series of molecular signals mediated by the detection of brassinosteroid.
0.049 1 GO:0009910 Any process that stops, prevents or reduces the frequency, rate or extent of flower development.

SF	Genes	GO ID	Process Name
0.222	1	GO:0033523	The modification of histone H2B by addition of ubiquitin groups.
0.065	1	GO:0009742	A series of molecular signals mediated by the detection of brassinosteroid.
0.049	1	GO:0009910	Any process that stops, prevents or reduces the frequency, rate or extent of flower development.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.019 1 04120 Ubiquitin mediated proteolysis

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.019	1	04120	Ubiquitin mediated proteolysis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g14400
Gene name	UBC1 (UBIQUITIN CARRIER PROTEIN 1)
Module size	5 genes
NF	0.32
%ile	41.2

Co-expression analysis

Gene ID At1g14400 Gene name UBC1 (UBIQUITIN CARRIER PROTEIN 1) Module size 5 genes NF 0.32 %ile 41.2

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.019104120Ubiquitin mediated proteolysis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g14400

Gene name UBC1 (UBIQUITIN CARRIER PROTEIN 1)

Module size 5 genes

NF 0.32

%ile 41.2

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.019 1 04120 Ubiquitin mediated proteolysis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays