CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g14240

Gene name nucleoside phosphatase family protein / GDA1/CD39 family protein

Module size 5 genes

NF 0.28

%ile 32.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.60 75.7 1.00 At1g14240 837985 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. H.G. S.X.
0.75 86.9 0.75 At1g55240 841967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP O.I. H.G. S.X.
0.36 43.6 0.72 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. H.G. S.X.
0.11 4.1 0.72 At5g44380 834464 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM O.I. H.G. S.X.
0.08 2.3 0.67 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.60	75.7	1.00	At1g14240	837985	nucleoside phosphatase family protein / GDA1/CD39 family protein	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	H.G.	S.X.
0.75	86.9	0.75	At1g55240	841967	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP	O.I.	H.G.	S.X.
0.36	43.6	0.72	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	H.G.	S.X.
0.11	4.1	0.72	At5g44380	834464	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM	O.I.	H.G.	S.X.
0.08	2.3	0.67	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
146.4 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
124.3 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
120.9 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
118.8 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
107.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
103.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
98.5 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
94.9 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
77.5 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.4 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
71.1 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.4 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
62.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.3 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.5 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
49.2 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.9 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.0 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8 99.6 GSM131673 ATGE_49_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
23.4 99.6 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
23.2 99.6 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
22.4 99.6 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
21.5 99.6 GSM131675 ATGE_49_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
18.9 99.5 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.9 99.5 GSM131677 ATGE_50_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
16.9 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.1 99.5 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3 99.4 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.5 99.4 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.1 99.4 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
13.8 99.4 GSM242963 Steroid day 7 (day7D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
13.7 99.4 GSM131676 ATGE_50_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
12.7 99.3 GSM131678 ATGE_50_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
11.7 99.3 E-MEXP-728-raw-cel-1062074608
11.2 99.2 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.7 99.2 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
10.7 99.2 GSM131684 ATGE_52_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.6 99.2 GSM242964 Steroid day 7 (day7D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
10.5 99.2 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.5 99.2 GSM131662 ATGE_29_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.5 99.2 GSM131682 ATGE_52_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.4 99.2 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.2 99.2 E-MEXP-1246-raw-cel-1504120321
10.1 99.2 E-MEXP-682-raw-cel-922397560
10.0 99.2 E-MEXP-1246-raw-cel-1504120171
9.7 99.1 E-MEXP-728-raw-cel-1062074577
9.7 99.1 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
9.6 99.1 GSM131666 ATGE_46_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.5 99.1 E-MEXP-1246-raw-cel-1504120261
9.4 99.1 E-MEXP-728-raw-cel-1062074684
9.0 99.1 GSM131664 ATGE_46_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.0 99.1 GSM131670 ATGE_48_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.0 99.1 E-MEXP-682-raw-cel-922397577
8.8 99.0 GSM131665 ATGE_46_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
8.7 99.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.6 99.0 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
8.6 99.0 E-MEXP-728-raw-cel-1062074653
8.6 99.0 GSM131668 ATGE_47_B GSE5633 AtGenExpress: Developmental series (shoots and stems)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
146.4	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
124.3	99.9	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
120.9	99.9	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
118.8	99.9	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
107.6	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
103.5	99.9	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
98.5	99.9	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
94.9	99.9	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
77.5	99.9	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.4	99.9	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
71.1	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
66.4	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
62.6	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.3	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.1	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.5	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
49.2	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.3	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.9	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
36.0	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8	99.6	GSM131673	ATGE_49_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
23.4	99.6	GSM131674	ATGE_49_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
23.2	99.6	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
22.4	99.6	GSM10442	WT Ovule 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
21.5	99.6	GSM131675	ATGE_49_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
18.9	99.5	GSM133774	Lindsey_1-26_torpedo-meristem_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.9	99.5	GSM131677	ATGE_50_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
16.9	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.1	99.5	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3	99.4	GSM242959	Steroid day 3 (day3D1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
14.5	99.4	GSM176878	AWP_AL_Txed_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.1	99.4	GSM242957	Mock day 3 (day3E1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
13.8	99.4	GSM242963	Steroid day 7 (day7D1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
13.7	99.4	GSM131676	ATGE_50_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
12.7	99.3	GSM131678	ATGE_50_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
11.7	99.3	E-MEXP-728-raw-cel-1062074608
11.2	99.2	GSM131661	ATGE_29_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
10.7	99.2	GSM242955	Steroid day 1 (day1D1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
10.7	99.2	GSM131684	ATGE_52_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
10.6	99.2	GSM242964	Steroid day 7 (day7D2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
10.5	99.2	GSM133755	Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.5	99.2	GSM131662	ATGE_29_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
10.5	99.2	GSM131682	ATGE_52_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
10.4	99.2	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.2	99.2	E-MEXP-1246-raw-cel-1504120321
10.1	99.2	E-MEXP-682-raw-cel-922397560
10.0	99.2	E-MEXP-1246-raw-cel-1504120171
9.7	99.1	E-MEXP-728-raw-cel-1062074577
9.7	99.1	GSM10441	WT Ovule 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
9.6	99.1	GSM131666	ATGE_46_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.5	99.1	E-MEXP-1246-raw-cel-1504120261
9.4	99.1	E-MEXP-728-raw-cel-1062074684
9.0	99.1	GSM131664	ATGE_46_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.0	99.1	GSM131670	ATGE_48_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.0	99.1	E-MEXP-682-raw-cel-922397577
8.8	99.0	GSM131665	ATGE_46_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
8.7	99.0	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.6	99.0	GSM242960	Steroid day 3 (day3D2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
8.6	99.0	E-MEXP-728-raw-cel-1062074653
8.6	99.0	GSM131668	ATGE_47_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g14240
Gene name	nucleoside phosphatase family protein / GDA1/CD39 family protein
Module size	5 genes
NF	0.28
%ile	32.7

Co-expression analysis

Gene ID At1g14240 Gene name nucleoside phosphatase family protein / GDA1/CD39 family protein Module size 5 genes NF 0.28 %ile 32.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g14240

Gene name nucleoside phosphatase family protein / GDA1/CD39 family protein

Module size 5 genes

NF 0.28

%ile 32.7

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays