CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g13420

Gene name ST4B (SULFOTRANSFERASE 4B)

Module size 5 genes

NF 0.45

%ile 63.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.20 14.4 1.00 At1g13420 837902 ST4B (SULFOTRANSFERASE 4B) Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment. O.I. H.G. S.X.
0.67 81.6 0.60 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) O.I. H.G. S.X.
0.67 81.6 0.65 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. H.G. S.X.
0.60 75.7 0.60 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. O.I. H.G. S.X.
0.43 55.3 0.66 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.20	14.4	1.00	At1g13420	837902	ST4B (SULFOTRANSFERASE 4B)	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.	O.I.	H.G.	S.X.
0.67	81.6	0.60	At2g20520	816574	FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)	fasciclin-like arabinogalactan-protein 6 (Fla6)	O.I.	H.G.	S.X.
0.67	81.6	0.65	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	H.G.	S.X.
0.60	75.7	0.60	At1g54970	841938	ATPRP1 (PROLINE-RICH PROTEIN 1)	encodes a proline-rich protein that is specifically expressed in the root.	O.I.	H.G.	S.X.
0.43	55.3	0.66	At5g19800	832100	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
408.3 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
119.2 99.9 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
55.6 99.8 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
53.2 99.8 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
49.6 99.8 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
47.4 99.8 E-MEXP-1592-raw-cel-1617526856
46.9 99.8 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
41.9 99.8 E-MEXP-849-raw-cel-1181980998
40.7 99.8 E-MEXP-1592-raw-cel-1617526984
38.1 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.1 99.7 E-MEXP-1592-raw-cel-1617526816
35.9 99.7 E-MEXP-1592-raw-cel-1617526888
34.2 99.7 E-MEXP-1592-raw-cel-1617526912
33.7 99.7 E-MEXP-828-raw-cel-1156922634
32.8 99.7 E-MEXP-1592-raw-cel-1617526920
32.1 99.7 E-MEXP-1592-raw-cel-1617526848
30.8 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
30.6 99.7 E-MEXP-1592-raw-cel-1617526952
29.8 99.7 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
29.7 99.7 E-MEXP-1592-raw-cel-1617526824
29.0 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.4 99.7 E-MEXP-828-raw-cel-1156922659
28.4 99.7 E-MEXP-828-raw-cel-1156922684
26.8 99.7 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.8 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.1 99.7 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
25.9 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.7 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.0 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.6 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.5 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.7 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.4 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.9 99.6 E-MEXP-1797-raw-cel-1669767958
20.7 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.4 99.6 E-MEXP-1592-raw-cel-1617526976
20.2 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.2 99.6 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
19.9 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.9 99.6 E-ATMX-31-raw-cel-1516947882
19.6 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.6 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5 99.6 E-MEXP-1797-raw-cel-1669768048
18.9 99.5 E-MEXP-1797-raw-cel-1669767976
18.9 99.5 E-TABM-63-raw-cel-681136722
18.7 99.5 E-MEXP-828-raw-cel-1156922438
18.7 99.5 E-ATMX-31-raw-cel-1516947899
18.4 99.5 E-MEXP-849-raw-cel-1181980990
18.1 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.0 99.5 E-MEXP-1797-raw-cel-1669767967
18.0 99.5 E-MEXP-1797-raw-cel-1669767994
17.8 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.4 99.5 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.2 99.5 E-MEXP-1797-raw-cel-1669767940
16.5 99.5 E-TABM-63-raw-cel-681136761
16.3 99.5 E-ATMX-31-raw-cel-1516947916
15.9 99.5 E-MEXP-1797-raw-cel-1669768012
15.7 99.5 E-MEXP-1797-raw-cel-1669768066
15.3 99.4 E-MEXP-1797-raw-cel-1669768030
15.0 99.4 E-MEXP-1592-raw-cel-1617526880
14.9 99.4 E-TABM-63-raw-cel-681137160
14.8 99.4 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
14.8 99.4 E-MEXP-1592-raw-cel-1617526944
14.5 99.4 E-MEXP-1797-raw-cel-1669768084
14.5 99.4 E-MEXP-1797-raw-cel-1669767949
14.5 99.4 E-MEXP-828-raw-cel-1156922485
14.5 99.4 E-MEXP-1797-raw-cel-1669768075
14.4 99.4 E-MEXP-1797-raw-cel-1669768021
14.4 99.4 E-MEXP-1797-raw-cel-1669768003
14.3 99.4 E-MEXP-828-raw-cel-1156922467
14.3 99.4 E-MEXP-1797-raw-cel-1669768057
14.2 99.4 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
14.0 99.4 GSM253200 Nontransgenic(ga1-3rgargl2)-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
13.8 99.4 GSM47017 Ler 7 GSE2473 Small RNA biogenesis mutants
13.8 99.4 E-MEXP-1797-raw-cel-1669767985
13.8 99.4 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
13.8 99.4 E-MEXP-828-raw-cel-1156922416
13.6 99.4 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
13.6 99.4 E-TABM-63-raw-cel-681137087
13.4 99.4 E-MEXP-148-raw-cel-350529355
13.1 99.4 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.9 99.3 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
12.7 99.3 E-MEXP-849-raw-cel-1181980982
12.5 99.3 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
12.3 99.3 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.1 99.3 E-MEXP-828-raw-cel-1156922968
12.1 99.3 GSM133814 Diamond_A-3-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
12.1 99.3 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.9 99.3 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.9 99.3 E-TABM-63-raw-cel-681136648
11.8 99.3 E-MEXP-1797-raw-cel-1669768039
11.7 99.3 E-MEXP-828-raw-cel-1156922872
11.6 99.3 GSM133811 Diamond_A-4-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.5 99.3 GSM133815 Diamond_A-4-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.5 99.3 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.4 99.3 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
11.4 99.3 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.4 99.3 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3 99.3 E-MEXP-828-raw-cel-1156922509
11.2 99.2 E-MEXP-828-raw-cel-1156922987
11.2 99.2 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
11.0 99.2 E-TABM-63-raw-cel-681136686
10.8 99.2 E-MEXP-849-raw-cel-1181980966
10.7 99.2 E-MEXP-849-raw-cel-1181980942
10.4 99.2 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
10.3 99.2 GSM128732 Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
10.3 99.2 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
10.3 99.2 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.3 99.2 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
10.2 99.2 GSM253199 Nontransgenic(ga1-3rgargl2)-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
10.2 99.2 GSM253197 RGA-GR-MOCK-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
10.2 99.2 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.2 99.2 GSM133311 RIKEN-LI1A GSE5701 AtGenExpress: Basic hormone treatment of seeds
9.9 99.1 E-MEXP-849-raw-cel-1181980934
9.8 99.1 GSM253194 RGA-GR-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
9.6 99.1 E-MEXP-849-raw-cel-1181980950
9.4 99.1 GSM75518 slr-1 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
9.3 99.1 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.2 99.1 E-MEXP-849-raw-cel-1181980894
9.1 99.1 E-MEXP-828-raw-cel-1156922891
9.0 99.1 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 GSM133812 Diamond_A-1-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
8.9 99.0 GSM131640 ATGE_92_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
8.9 99.0 GSM131641 ATGE_92_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
8.8 99.0 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.7 99.0 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
8.7 99.0 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
8.6 99.0 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.6 99.0 GSM27363 lec1-1 Floral Bud GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
408.3	100.0	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
119.2	99.9	GSM133119	RIKEN-YAMAUCHI2A	GSE5687	AtGenExpress: Different temperature treatment of seeds
55.6	99.8	GSM226541	L11SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
53.2	99.8	GSM131578	ATGE_31_C2	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
49.6	99.8	GSM131577	ATGE_31_B2	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
47.4	99.8	E-MEXP-1592-raw-cel-1617526856
46.9	99.8	GSM131576	ATGE_31_A2	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
41.9	99.8	E-MEXP-849-raw-cel-1181980998
40.7	99.8	E-MEXP-1592-raw-cel-1617526984
38.1	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.1	99.7	E-MEXP-1592-raw-cel-1617526816
35.9	99.7	E-MEXP-1592-raw-cel-1617526888
34.2	99.7	E-MEXP-1592-raw-cel-1617526912
33.7	99.7	E-MEXP-828-raw-cel-1156922634
32.8	99.7	E-MEXP-1592-raw-cel-1617526920
32.1	99.7	E-MEXP-1592-raw-cel-1617526848
30.8	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
30.6	99.7	E-MEXP-1592-raw-cel-1617526952
29.8	99.7	GSM253198	RGA-GR-DEX-REP3	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
29.7	99.7	E-MEXP-1592-raw-cel-1617526824
29.0	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.4	99.7	E-MEXP-828-raw-cel-1156922659
28.4	99.7	E-MEXP-828-raw-cel-1156922684
26.8	99.7	GSM226554	Slice12JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.8	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.1	99.7	GSM133120	RIKEN-YAMAUCHI2B	GSE5687	AtGenExpress: Different temperature treatment of seeds
25.9	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.7	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.0	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.6	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.5	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.7	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.4	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.9	99.6	E-MEXP-1797-raw-cel-1669767958
20.7	99.6	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.4	99.6	E-MEXP-1592-raw-cel-1617526976
20.2	99.6	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.2	99.6	GSM142904	WW002_ATH1_A1-willa-CON-REP2	GSE6181	Assembly of the cell wall pectic matrix.
19.9	99.6	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.9	99.6	E-ATMX-31-raw-cel-1516947882
19.6	99.6	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.6	99.6	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5	99.6	E-MEXP-1797-raw-cel-1669768048
18.9	99.5	E-MEXP-1797-raw-cel-1669767976
18.9	99.5	E-TABM-63-raw-cel-681136722
18.7	99.5	E-MEXP-828-raw-cel-1156922438
18.7	99.5	E-ATMX-31-raw-cel-1516947899
18.4	99.5	E-MEXP-849-raw-cel-1181980990
18.1	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.0	99.5	E-MEXP-1797-raw-cel-1669767967
18.0	99.5	E-MEXP-1797-raw-cel-1669767994
17.8	99.5	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.4	99.5	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.2	99.5	E-MEXP-1797-raw-cel-1669767940
16.5	99.5	E-TABM-63-raw-cel-681136761
16.3	99.5	E-ATMX-31-raw-cel-1516947916
15.9	99.5	E-MEXP-1797-raw-cel-1669768012
15.7	99.5	E-MEXP-1797-raw-cel-1669768066
15.3	99.4	E-MEXP-1797-raw-cel-1669768030
15.0	99.4	E-MEXP-1592-raw-cel-1617526880
14.9	99.4	E-TABM-63-raw-cel-681137160
14.8	99.4	GSM184845	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
14.8	99.4	E-MEXP-1592-raw-cel-1617526944
14.5	99.4	E-MEXP-1797-raw-cel-1669768084
14.5	99.4	E-MEXP-1797-raw-cel-1669767949
14.5	99.4	E-MEXP-828-raw-cel-1156922485
14.5	99.4	E-MEXP-1797-raw-cel-1669768075
14.4	99.4	E-MEXP-1797-raw-cel-1669768021
14.4	99.4	E-MEXP-1797-raw-cel-1669768003
14.3	99.4	E-MEXP-828-raw-cel-1156922467
14.3	99.4	E-MEXP-1797-raw-cel-1669768057
14.2	99.4	GSM253196	RGA-GR-DEX-REP2	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
14.0	99.4	GSM253200	Nontransgenic(ga1-3rgargl2)-DEX-REP2	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
13.8	99.4	GSM47017	Ler 7	GSE2473	Small RNA biogenesis mutants
13.8	99.4	E-MEXP-1797-raw-cel-1669767985
13.8	99.4	GSM134208	Murray_3-4_D7-GROWTH_Rep1_ATH1	GSE5750	Growth of suspension-cultured cells
13.8	99.4	E-MEXP-828-raw-cel-1156922416
13.6	99.4	GSM133813	Diamond_A-2-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
13.6	99.4	E-TABM-63-raw-cel-681137087
13.4	99.4	E-MEXP-148-raw-cel-350529355
13.1	99.4	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.9	99.3	GSM134204	Murray_3-2_D3-GROWTH_Rep1_ATH1	GSE5750	Growth of suspension-cultured cells
12.7	99.3	E-MEXP-849-raw-cel-1181980982
12.5	99.3	GSM142902	WW001_ATH1_A1-WILLA-CON	GSE6181	Assembly of the cell wall pectic matrix.
12.3	99.3	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.1	99.3	E-MEXP-828-raw-cel-1156922968
12.1	99.3	GSM133814	Diamond_A-3-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
12.1	99.3	GSM133809	Diamond_A-2-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.9	99.3	GSM133810	Diamond_A-3-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.9	99.3	E-TABM-63-raw-cel-681136648
11.8	99.3	E-MEXP-1797-raw-cel-1669768039
11.7	99.3	E-MEXP-828-raw-cel-1156922872
11.6	99.3	GSM133811	Diamond_A-4-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.5	99.3	GSM133815	Diamond_A-4-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.5	99.3	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.4	99.3	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
11.4	99.3	GSM133808	Diamond_A-1-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.4	99.3	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3	99.3	E-MEXP-828-raw-cel-1156922509
11.2	99.2	E-MEXP-828-raw-cel-1156922987
11.2	99.2	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
11.0	99.2	E-TABM-63-raw-cel-681136686
10.8	99.2	E-MEXP-849-raw-cel-1181980966
10.7	99.2	E-MEXP-849-raw-cel-1181980942
10.4	99.2	GSM75509	Col-0 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.3	99.2	GSM128732	Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
10.3	99.2	GSM133950	Murray_2-6_T10-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
10.3	99.2	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.3	99.2	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.2	99.2	GSM253199	Nontransgenic(ga1-3rgargl2)-DEX-REP1	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
10.2	99.2	GSM253197	RGA-GR-MOCK-REP3	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
10.2	99.2	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.2	99.2	GSM133311	RIKEN-LI1A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
9.9	99.1	E-MEXP-849-raw-cel-1181980934
9.8	99.1	GSM253194	RGA-GR-DEX-REP1	GSE10019	Identification of RGA downstream genes by using steroid-inducible system
9.6	99.1	E-MEXP-849-raw-cel-1181980950
9.4	99.1	GSM75518	slr-1 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
9.3	99.1	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.2	99.1	E-MEXP-849-raw-cel-1181980894
9.1	99.1	E-MEXP-828-raw-cel-1156922891
9.0	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	GSM133812	Diamond_A-1-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
8.9	99.0	GSM131640	ATGE_92_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
8.9	99.0	GSM131641	ATGE_92_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
8.8	99.0	GSM226553	Slice11JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
8.7	99.0	GSM142907	WW002_ATH1_A2-willa-ISOX-REP3	GSE6181	Assembly of the cell wall pectic matrix.
8.7	99.0	GSM142906	WW002_ATH1_A2-willa-ISOX-REP2	GSE6181	Assembly of the cell wall pectic matrix.
8.6	99.0	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.6	99.0	GSM27363	lec1-1 Floral Bud	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0009735 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.039	1	GO:0009735	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.024 1 00360 Phenylalanine metabolism
0.023 1 00680 Methane metabolism
0.019 1 00940 Phenylpropanoid biosynthesis

SF	Genes	KEGG ID	Pathway name
0.024	1	00360	Phenylalanine metabolism
0.023	1	00680	Methane metabolism
0.019	1	00940	Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At1g13420
Gene name	ST4B (SULFOTRANSFERASE 4B)
Module size	5 genes
NF	0.45
%ile	63.8

Co-expression analysis

Gene ID At1g13420 Gene name ST4B (SULFOTRANSFERASE 4B) Module size 5 genes NF 0.45 %ile 63.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0391GO:0009735A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.024100360Phenylalanine metabolism0.023100680Methane metabolism0.019100940Phenylpropanoid biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g13420

Gene name ST4B (SULFOTRANSFERASE 4B)

Module size 5 genes

NF 0.45

%ile 63.8

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0009735 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.

SF Genes KEGG ID Pathway name Link to KEGG
0.024 1 00360 Phenylalanine metabolism
0.023 1 00680 Methane metabolism
0.019 1 00940 Phenylpropanoid biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays