Co-expression analysis

Gene ID At1g13100
Gene name CYP71B29
Module size 61 genes
NF 0.25
%ile 26.1

Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g13100837867CYP71B29putative cytochrome P450O.I.H.G.S.X.
0.5773.80.81At3g61430825316PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.O.I.H.G.S.X.
0.4761.20.81At5g07220830613ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.H.G.S.X.
0.4253.90.81At4g20260827773DREPP plasma membrane polypeptide family proteinEncodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.O.I.H.G.S.X.
0.4050.80.81At3g03000821161calmodulin, putativeCalmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent mannerO.I.H.G.S.X.
0.3948.40.81At5g40890834090ATCLC-A (CHLORIDE CHANNEL A)Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate.O.I.H.G.S.X.
0.3846.70.81At4g40080830171epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, binding;P:biological_process unknown;C:chloroplast;PMOO.I.H.G.S.X.
0.3745.00.83At1g32410840134vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;MFPOO.I.H.G.S.X.
0.3643.60.82At5g19860832107unknown proteinF:unknown;P:biological_process unknown;C:vacuole;POO.I.H.G.S.X.
0.3643.60.84At1g59580842248ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2)encodes a mitogen-activated kinase involved in innate immunityO.I.H.G.S.X.
0.3643.60.83At3g11780820352MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;FPOO.I.H.G.S.X.
0.3643.60.82At1g49240841347ACT8 (ACTIN 8)Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen.O.I.H.G.S.X.
0.3541.60.82At3g30390822740amino acid transporter family proteinEncodes a putative amino acid transporter.O.I.H.G.S.X.
0.3338.10.81At3g47670823921enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3338.10.84At4g25570828662ACYB-2Encodes cytochrome b561.O.I.H.G.S.X.
0.3235.70.81At4g08930826471ATAPRL6 (APR-like 6)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.O.I.H.G.S.X.
0.3133.80.83At4g28770828998-F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;POO.I.H.G.S.X.
0.3133.80.82At2g20230816542-F:unknown;P:unknown;C:plasma membrane, vacuole;POO.I.H.G.S.X.
0.3032.10.81At1g79590844297SYP52 (SYNTAXIN OF PLANTS 52)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.O.I.H.G.S.X.
0.3032.10.82At5g18120831930ATAPRL7 (APR-like 7)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.O.I.H.G.S.X.
0.2830.30.81At4g19860827730lecithin:cholesterol acyltransferase family protein / LACT family proteinF:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:cellular_component unknown;MOPBFAO.I.H.G.S.X.
0.2830.30.81At1g17080838278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.30.82At3g27890822411NQR (NADPH:QUINONE OXIDOREDUCTASE)Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay.O.I.H.G.S.X.
0.2830.30.81At3g56930824860zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPVO.I.H.G.S.X.
0.2726.20.81At3g24503822042ALDH2C4Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectivelyO.I.H.G.S.X.
0.2726.20.80At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.S.X.
0.2726.20.83At3g27390822360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.2624.40.81At5g65430836668GRF8 (GENERAL REGULATORY FACTOR 8)member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.2624.40.80At4g38250829982amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVO.I.H.G.S.X.
0.2624.40.80At2g25070817045protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.2624.40.81At1g70330843369ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)encodes an adenosine transporter that catalyze a proton-dependent adenosine transport.O.I.H.G.S.X.
0.2522.60.82At1g17340838305phosphoinositide phosphatase family proteinF:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;P:unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2522.60.81At3g63080825483ATGPX5 (glutathione peroxidase 5)Encodes glutathione peroxidase.O.I.H.G.S.X.
0.2522.60.83At3g18780821411ACT2 (ACTIN 2)Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.O.I.H.G.S.X.
0.2522.60.82At3g57790824949glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:plasma membrane;PBFOMAVO.I.H.G.S.X.
0.2522.60.80At5g35370833498ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.2420.70.80At3g04880819648DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).O.I.H.G.S.X.
0.2420.70.81At2g15570816050thioredoxin M-type 3, chloroplast (TRX-M3)chloroplast protein similar to prokaryotic thioredoxin.O.I.H.G.S.X.
0.2319.30.80At5g49720835035ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1.O.I.H.G.S.X.
0.2319.30.81At1g71090843449auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOBAO.I.H.G.S.X.
0.2319.30.81At2g32080817768PUR ALPHA-1similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replicationO.I.H.G.S.X.
0.2217.50.80At2g30740817625serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.2115.80.82At4g32040829335KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.O.I.H.G.S.X.
0.2115.80.81At3g06380819812ATTLP9 (TUBBY-LIKE PROTEIN 9)Member of TLP familyO.I.H.G.S.X.
0.2115.80.81At3g51520824315diacylglycerol acyltransferase familyF:diacylglycerol O-acyltransferase activity, transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;MBFOPO.I.H.G.S.X.
0.2115.80.80At1g07240837235UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.H.G.S.X.
0.2014.40.81At4g31450829272zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.H.G.S.X.
0.2014.40.80At5g27840832846TOPP8encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.O.I.H.G.S.X.
0.1912.70.81At3g55960824762NLI interacting factor (NIF) family proteinF:phosphatase activity;P:biological_process unknown;C:unknown;MOFPO.I.H.G.S.X.
0.1912.70.81At1g04440839520CKL13 (CASEIN KINASE LIKE 13)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAO.I.H.G.S.X.
0.1912.70.80At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.O.I.H.G.S.X. (VILLIN 3)Encodes a protein with high homology to animal villin.O.I.H.G.S.X. (NIN LIKE PROTEIN 7)Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor.O.I.H.G.S.X. (exocyst subunit EXO70 family protein D3)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.H.G.S.X. (FARNESYLCYSTEINE LYASE)encodes for a farnesylcysteine lyase (EC - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate.O.I.H.G.S.X. (SYNTAXIN OF PLANTS 71)syntaxin of plants 71 (SYP71)O.I.H.G.S.X. finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFVBO.I.H.G.S.X. G-protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X. zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X. resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.H.G.S.X. (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
80.699.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
78.899.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
76.999.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
60.299.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.599.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.899.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.899.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.799.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.699.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.699.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.299.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.199.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.099.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.899.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.299.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.199.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.399.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.799.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.799.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.699.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.699.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.699.3GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.499.3GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.999.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.999.2GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
10.399.2GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.499.1GSM226537L7SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.799.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0552GO:0048768Localized growth of a plant root hair tip by extension of the cell wall.Link to AmiGO
0.0532GO:0010167A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.Link to AmiGO
0.0462GO:0009742A series of molecular signals mediated by the detection of brassinosteroid.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.055304130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.029100590Arachidonic acid metabolismLink to KEGG PATHWAY
0.026104650Natural killer cell mediated cytotoxicityLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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