CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g10810

Gene name aldo/keto reductase family protein

Module size 5 genes

NF 0.33

%ile 42.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.60 75.7 1.00 At1g10810 837624 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA O.I. H.G. S.X.
0.33 38.1 0.75 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. H.G. S.X.
0.31 33.8 0.77 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. H.G. S.X.
0.29 30.3 0.77 At5g57500 835854 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF O.I. H.G. S.X.
0.28 30.3 0.76 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.60	75.7	1.00	At1g10810	837624	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA	O.I.	H.G.	S.X.
0.33	38.1	0.75	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	H.G.	S.X.
0.31	33.8	0.77	At1g50720	841494	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	H.G.	S.X.
0.29	30.3	0.77	At5g57500	835854	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF	O.I.	H.G.	S.X.
0.28	30.3	0.76	At1g14080	837968	FUT6 (FUCOSYLTRANSFERASE 6)	member of Xyloglucan fucosyltransferase family	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.46	59.8	0.69	At1g36770	3767031	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.78	At1g33280	840223	ANAC015 (Arabidopsis NAC domain containing protein 15)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.40	50.8	0.81	At4g01240	827909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.36	43.6	0.70	At2g40470	818641	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.32	35.7	0.76	At5g60520	836173	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.31	33.8	0.75	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.29	30.3	0.74	At5g66280	836760	GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)	GDP-D-mannose 4,6-dehydratase	O.I.	H.G.	S.X.
0.29	30.3	0.60	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	H.G.	S.X.
0.27	26.2	0.65	At2g35770	818149	scpl28 (serine carboxypeptidase-like 28)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	H.G.	S.X.
0.26	24.4	0.55	At1g22880	838893	CEL5 (CELLULASE 5)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	H.G.	S.X.
0.26	24.4	0.76	At4g27400	828848	late embryogenesis abundant protein-related / LEA protein-related	F:unknown;P:response to salt stress;C:endomembrane system;P	O.I.	H.G.	S.X.

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.1 99.8 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
48.6 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
37.5 99.7 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
17.1 99.5 GSM109112 vte1-1(Col-0) 1 day, biological rep3 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
15.6 99.5 E-MEXP-849-raw-cel-1181981046
15.1 99.4 GSM109110 vte1-1(Col-0) 1 day, biological rep1 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
14.7 99.4 GSM109111 vte1-1(Col-0) 1 day, biological rep2 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
14.1 99.4 GSM109109 wild-type(Col-0) 1 day, biological rep3 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
12.8 99.3 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
11.9 99.3 GSM142841 MG001_ATH1_A22-Torres-7N1 GSE6176 Impact of Type III effectors on plant defense responses
11.6 99.3 GSM27364 lec1-1 Rosette Leaf GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
11.5 99.3 GSM134448 St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
11.5 99.3 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
11.3 99.3 GSM109108 wild-type(Col-0) 1 day, biological rep2 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
11.1 99.2 GSM131540 ATGE_26_A GSE5630 AtGenExpress: Developmental series (leaves)
10.9 99.2 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
10.7 99.2 GSM109114 vte2-1(Col-0) 1 day, biological rep2 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
10.6 99.2 GSM133066 2503 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
10.3 99.2 GSM109113 vte2-1(Col-0) 1 day, biological rep1 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
10.1 99.2 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
9.9 99.1 GSM131542 ATGE_26_C GSE5630 AtGenExpress: Developmental series (leaves)
9.9 99.1 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
9.8 99.1 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
9.6 99.1 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.6 99.1 GSM133068 2530 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
9.4 99.1 E-MEXP-849-raw-cel-1181981038
9.4 99.1 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.3 99.1 GSM94007 A1-1 first repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
9.3 99.1 E-MEXP-1607-raw-cel-1620685818
9.2 99.1 GSM133057 2504 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
9.0 99.1 GSM299321 Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
9.0 99.1 GSM133067 2505 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
9.0 99.1 GSM297386 At.StarchSD.WTSS3.SS3R2D8 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
8.9 99.0 GSM299323 Wild Type Germinating Seeds With Solvent Treatment Only Set 3 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
8.7 99.0 GSM133305 RIKEN-NAKABAYASHI2A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
8.6 99.0 GSM299337 Wild Type Germinating Seeds With Uniconazole Treatment Set 5 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
58.1	99.8	GSM134301	Penfield_1-3_endosperm-control_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
48.6	99.8	GSM134300	Penfield_1-2_endosperm-control_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
37.5	99.7	GSM134299	Penfield_1-1_endosperm-control_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
17.1	99.5	GSM109112	vte1-1(Col-0) 1 day, biological rep3	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
15.6	99.5	E-MEXP-849-raw-cel-1181981046
15.1	99.4	GSM109110	vte1-1(Col-0) 1 day, biological rep1	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
14.7	99.4	GSM109111	vte1-1(Col-0) 1 day, biological rep2	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
14.1	99.4	GSM109109	wild-type(Col-0) 1 day, biological rep3	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
12.8	99.3	GSM134306	Penfield_1-8_endosperm-PAC_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
11.9	99.3	GSM142841	MG001_ATH1_A22-Torres-7N1	GSE6176	Impact of Type III effectors on plant defense responses
11.6	99.3	GSM27364	lec1-1 Rosette Leaf	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
11.5	99.3	GSM134448	St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
11.5	99.3	GSM253166	48h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
11.3	99.3	GSM109108	wild-type(Col-0) 1 day, biological rep2	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
11.1	99.2	GSM131540	ATGE_26_A	GSE5630	AtGenExpress: Developmental series (leaves)
10.9	99.2	GSM131539	ATGE_25_C	GSE5630	AtGenExpress: Developmental series (leaves)
10.7	99.2	GSM109114	vte2-1(Col-0) 1 day, biological rep2	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
10.6	99.2	GSM133066	2503	GSE5685	AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
10.3	99.2	GSM109113	vte2-1(Col-0) 1 day, biological rep1	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
10.1	99.2	GSM131538	ATGE_25_B	GSE5630	AtGenExpress: Developmental series (leaves)
9.9	99.1	GSM131542	ATGE_26_C	GSE5630	AtGenExpress: Developmental series (leaves)
9.9	99.1	GSM131537	ATGE_25_A	GSE5630	AtGenExpress: Developmental series (leaves)
9.8	99.1	GSM134304	Penfield_1-6_endosperm-ABA_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
9.6	99.1	GSM152135	Col-0 drought 1	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.6	99.1	GSM133068	2530	GSE5685	AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
9.4	99.1	E-MEXP-849-raw-cel-1181981038
9.4	99.1	GSM152139	Col-0 drought 3	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.3	99.1	GSM94007	A1-1 first repeat	GSE4113	Arabidopsis plants with altered levels of alternative oxidase
9.3	99.1	E-MEXP-1607-raw-cel-1620685818
9.2	99.1	GSM133057	2504	GSE5685	AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
9.0	99.1	GSM299321	Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.0	99.1	GSM133067	2505	GSE5685	AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
9.0	99.1	GSM297386	At.StarchSD.WTSS3.SS3R2D8	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
8.9	99.0	GSM299323	Wild Type Germinating Seeds With Solvent Treatment Only Set 3 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
8.7	99.0	GSM133305	RIKEN-NAKABAYASHI2A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
8.6	99.0	GSM299337	Wild Type Germinating Seeds With Uniconazole Treatment Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0042546 The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
0.048 1 GO:0006486 The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
0.016 1 GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.

SF	Genes	GO ID	Process Name
0.100	1	GO:0042546	The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
0.048	1	GO:0006486	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
0.016	1	GO:0055114	The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g10810
Gene name	aldo/keto reductase family protein
Module size	5 genes
NF	0.33
%ile	42.5

Co-expression analysis

Gene ID At1g10810 Gene name aldo/keto reductase family protein Module size 5 genes NF 0.33 %ile 42.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g10810

Gene name aldo/keto reductase family protein

Module size 5 genes

NF 0.33

%ile 42.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays