Co-expression analysis

Gene ID At1g10810
Gene name aldo/keto reductase family protein
Module size 5 genes
NF 0.33
%ile 42.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6075.71.00At1g10810837624aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPAO.I.H.G.S.X.
0.3338.10.75At1g73340843669electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAVO.I.H.G.S.X.
0.3133.80.77At1g50720841494stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.H.G.S.X.
0.2930.30.77At5g57500835854transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOFO.I.H.G.S.X.
0.2830.30.76At1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.199.8GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
48.699.8GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
37.599.7GSM134299Penfield_1-1_endosperm-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
17.199.5GSM109112vte1-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
15.699.5E-MEXP-849-raw-cel-1181981046
15.199.4GSM109110vte1-1(Col-0) 1 day, biological rep1GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
14.799.4GSM109111vte1-1(Col-0) 1 day, biological rep2GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
14.199.4GSM109109wild-type(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
12.899.3GSM134306Penfield_1-8_endosperm-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
11.999.3GSM142841MG001_ATH1_A22-Torres-7N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
11.699.3GSM27364lec1-1 Rosette LeafGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
11.599.3GSM134448St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
11.599.3GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
11.399.3GSM109108wild-type(Col-0) 1 day, biological rep2GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
11.199.2GSM131540ATGE_26_AGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
10.999.2GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
10.799.2GSM109114vte2-1(Col-0) 1 day, biological rep2GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
10.699.2GSM1330662503GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
10.399.2GSM109113vte2-1(Col-0) 1 day, biological rep1GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
10.199.2GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
9.999.1GSM131542ATGE_26_CGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
9.999.1GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
9.899.1GSM134304Penfield_1-6_endosperm-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
9.699.1GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
9.699.1GSM1330682530GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
9.499.1E-MEXP-849-raw-cel-1181981038
9.499.1GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
9.399.1GSM94007A1-1 first repeatGSE4113Arabidopsis plants with altered levels of alternative oxidaseLink to GEO
9.399.1E-MEXP-1607-raw-cel-1620685818
9.299.1GSM1330572504GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
9.099.1GSM299321Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.099.1GSM1330672505GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
9.099.1GSM297386At.StarchSD.WTSS3.SS3R2D8GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
8.999.0GSM299323Wild Type Germinating Seeds With Solvent Treatment Only Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
8.799.0GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
8.699.0GSM299337Wild Type Germinating Seeds With Uniconazole Treatment Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1001GO:0042546The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.Link to AmiGO
0.0481GO:0006486The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.Link to AmiGO
0.0161GO:0055114The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.58546.1.S1_at, orthologous to the query gene, At1g10810

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8894.4TaAffx.58546.1.S1_at---4e-3At1g60690aldo/keto reductase family proteinO.I.H.G.S.X.
0.6583.9TaAffx.51734.1.S1_x_at---2e+0At1g02780emb2386 (embryo defective 2386)O.I.H.G.S.X.
0.6583.9TaAffx.105981.1.S1_at---3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.5576.8TaAffx.110614.4.S1_at---3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.5576.8TaAffx.58853.1.S1_at---3e+0At1g57565-O.I.H.G.S.X.
0.5374.9TaAffx.105943.1.S1_at---2e+1At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.H.G.S.X.
0.5374.9TaAffx.112440.1.S1_at---4e-1At3g11050ATFER2 (ferritin 2)O.I.H.G.S.X.
0.5273.7Ta.16453.1.S1_at---1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.4869.0TaAffx.13785.2.S1_at---7e-8At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.
0.4869.0TaAffx.51911.1.S1_at---3e+0At1g78300GRF2 (GENERAL REGULATORY FACTOR 2)O.I.H.G.S.X.
0.4869.0TaAffx.112556.1.S1_at---4e+0At1g67760ATP binding / protein binding / unfolded protein bindingO.I.H.G.S.X.
0.4767.9TaAffx.64914.1.S1_at---4e+0At1g51915cryptdin protein-relatedO.I.H.G.S.X.
0.4260.9TaAffx.59475.1.S1_at---3e-1At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.4159.6TaAffx.110665.1.S1_at---4e+0At2g33250unknown proteinO.I.H.G.S.X.
0.3753.0Ta.19591.2.A1_a_at---4e+0At5g11500unknown proteinO.I.H.G.S.X.
0.3346.9TaAffx.79603.1.S1_at---4e+0At2g34010unknown proteinO.I.H.G.S.X.
0.2532.1TaAffx.120617.1.S1_at---4e+0At2g39470PPL2 (PsbP-like protein 2)O.I.H.G.S.X.
0.1719.8TaAffx.25064.1.S1_at---2e+0At2g19290unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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