CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g09970

Gene name LRR XI-23

Module size 5 genes

NF 0.31

%ile 39.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.73 85.5 1.00 At1g09970 837531 LRR XI-23 F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.44 57.2 0.87 At2g32240 817784 - F:molecular_function unknown;P:response to cadmium ion;C:plasma membrane;MOBFPAV O.I. H.G. S.X.
0.40 50.8 0.86 At5g11670 831039 ATNADP-ME2 (NADP-malic enzyme 2) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis. O.I. H.G. S.X.
0.23 19.3 0.86 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). O.I. H.G. S.X.
0.13 5.8 0.86 At3g20410 821586 CPK9 (calmodulin-domain protein kinase 9) calmodulin-domain protein kinase CDPK isoform 9 (CPK9) O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.5 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.4 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.0 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.2 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.8 99.2 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.4 99.1 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.5 99.0 E-MEXP-265-raw-cel-414618394
8.1 98.9 E-MEXP-265-raw-cel-414618693
7.4 98.8 E-MEXP-265-raw-cel-414618291
6.2 98.6 E-MEXP-265-raw-cel-414618491
5.6 98.4 E-MEXP-265-raw-cel-414618796

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0009051 The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2).
0.133 1 GO:0006108 The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
0.074 1 GO:0046777 The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.029 1 00620 Pyruvate metabolism
0.025 1 00710 Carbon fixation in photosynthetic organisms
0.013 1 01066 Biosynthesis of alkaloids derived from terpenoid and polyketide

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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