CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g09560

Gene name GLP5 (GERMIN-LIKE PROTEIN 5)

Module size 5 genes

NF 0.42

%ile 58.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.55 70.6 1.00 At1g09560 837482 GLP5 (GERMIN-LIKE PROTEIN 5) germin-like protein (GLP5) O.I. H.G. S.X.
0.57 73.8 0.82 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. H.G. S.X.
0.40 50.8 0.82 At4g20110 827757 vacuolar sorting receptor, putative F:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFA O.I. H.G. S.X.
0.33 38.1 0.79 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. H.G. S.X.
0.32 35.7 0.85 At1g09740 837502 ethylene-responsive protein, putative F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.55	70.6	1.00	At1g09560	837482	GLP5 (GERMIN-LIKE PROTEIN 5)	germin-like protein (GLP5)	O.I.	H.G.	S.X.
0.57	73.8	0.82	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	H.G.	S.X.
0.40	50.8	0.82	At4g20110	827757	vacuolar sorting receptor, putative	F:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFA	O.I.	H.G.	S.X.
0.33	38.1	0.79	At3g26440	822248	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	H.G.	S.X.
0.32	35.7	0.85	At1g09740	837502	ethylene-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
74.0 99.9 E-MEXP-265-raw-cel-414618394
70.5 99.9 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
69.3 99.9 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
64.6 99.8 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
64.1 99.8 E-MEXP-265-raw-cel-414618291
52.8 99.8 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
50.6 99.8 E-MEXP-265-raw-cel-414618491
38.0 99.8 E-MEXP-265-raw-cel-414618693
35.7 99.7 E-MEXP-265-raw-cel-414618796
31.5 99.7 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
23.9 99.6 E-MEXP-1451-raw-cel-1585200362
23.4 99.6 E-MEXP-265-raw-cel-414617695
20.6 99.6 E-MEXP-265-raw-cel-414618585
18.1 99.5 GSM131660 ATGE_28_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
17.5 99.5 E-MEXP-265-raw-cel-414617783
16.9 99.5 GSM27362 WT Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
16.5 99.5 GSM131659 ATGE_28_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
16.3 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.3 99.5 GSM133750 Turner_A-4-Turne-Mut-Base2_SLD GSE5729 Role of COV in vascular patterning
16.0 99.5 GSM131658 ATGE_28_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
15.3 99.4 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.0 99.4 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.9 99.4 E-MEXP-265-raw-cel-414617890
14.7 99.4 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.5 99.4 GSM133749 Turner_A-3-Turne-Mut-Base1_SLD GSE5729 Role of COV in vascular patterning
14.4 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.3 99.4 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
13.2 99.4 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.2 99.4 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.0 99.4 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.4 99.3 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.4 99.3 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.4 99.3 GSM27366 lec1-1 Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
12.1 99.3 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.0 99.3 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.8 99.3 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.2 99.2 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.0 99.2 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4 99.2 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4 99.2 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.3 99.2 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.1 99.2 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.8 99.1 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 E-MEXP-1451-raw-cel-1585200330
8.8 99.0 E-MEXP-285-raw-cel-440783213

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
74.0	99.9	E-MEXP-265-raw-cel-414618394
70.5	99.9	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
69.3	99.9	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
64.6	99.8	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
64.1	99.8	E-MEXP-265-raw-cel-414618291
52.8	99.8	GSM133753	Turner_A-7-Turne-WT-Base1_SLD	GSE5729	Role of COV in vascular patterning
50.6	99.8	E-MEXP-265-raw-cel-414618491
38.0	99.8	E-MEXP-265-raw-cel-414618693
35.7	99.7	E-MEXP-265-raw-cel-414618796
31.5	99.7	GSM133754	Turner_A-8-Turne-WT-Base2_SLD	GSE5729	Role of COV in vascular patterning
23.9	99.6	E-MEXP-1451-raw-cel-1585200362
23.4	99.6	E-MEXP-265-raw-cel-414617695
20.6	99.6	E-MEXP-265-raw-cel-414618585
18.1	99.5	GSM131660	ATGE_28_C2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
17.5	99.5	E-MEXP-265-raw-cel-414617783
16.9	99.5	GSM27362	WT Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
16.5	99.5	GSM131659	ATGE_28_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
16.3	99.5	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.3	99.5	GSM133750	Turner_A-4-Turne-Mut-Base2_SLD	GSE5729	Role of COV in vascular patterning
16.0	99.5	GSM131658	ATGE_28_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
15.3	99.4	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.0	99.4	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
14.9	99.4	E-MEXP-265-raw-cel-414617890
14.7	99.4	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.5	99.4	GSM133749	Turner_A-3-Turne-Mut-Base1_SLD	GSE5729	Role of COV in vascular patterning
14.4	99.4	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.3	99.4	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
13.2	99.4	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.2	99.4	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.0	99.4	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.4	99.3	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.4	99.3	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.4	99.3	GSM27366	lec1-1 Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
12.1	99.3	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.0	99.3	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.8	99.3	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.2	99.2	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.0	99.2	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.8	99.2	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4	99.2	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4	99.2	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.3	99.2	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.1	99.2	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.8	99.1	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9	99.0	E-MEXP-1451-raw-cel-1585200330
8.8	99.0	E-MEXP-285-raw-cel-440783213

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.083 1 GO:0006623 The process of directing proteins towards the vacuole, usually using signals contained within the protein.
0.020 1 GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
0.012 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

SF	Genes	GO ID	Process Name
0.083	1	GO:0006623	The process of directing proteins towards the vacuole, usually using signals contained within the protein.
0.020	1	GO:0006950	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
0.012	1	GO:0006886	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g09560
Gene name	GLP5 (GERMIN-LIKE PROTEIN 5)
Module size	5 genes
NF	0.42
%ile	58.4

Co-expression analysis

Gene ID At1g09560 Gene name GLP5 (GERMIN-LIKE PROTEIN 5) Module size 5 genes NF 0.42 %ile 58.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At1g09560

Gene name GLP5 (GERMIN-LIKE PROTEIN 5)

Module size 5 genes

NF 0.42

%ile 58.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays