Co-expression analysis

Gene ID At1g08930
Gene name ERD6 (EARLY RESPONSE TO DEHYDRATION 6)
Module size 6 genes
NF 0.61
%ile 82.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9195.61.00At1g08930837414ERD6 (EARLY RESPONSE TO DEHYDRATION 6)encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.O.I.H.G.S.X.
0.8391.40.89At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAO.I.H.G.S.X.
0.5773.80.91At1g59870842281PEN3 (PENETRATION 3)ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.O.I.H.G.S.X.
0.5773.80.91At2g44490819056PEN2 (PENETRATION 2)Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance.O.I.H.G.S.X.
0.4355.30.90At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.H.G.S.X.
0.2522.60.89At5g61210836242SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formationO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.699.6GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
17.899.5GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.899.5GSM290753root - 01% oxygen - 2h - EGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
16.699.5GSM131237AtGen_6-0221_Control-Roots-1.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
15.299.4GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.399.3E-MEXP-807-raw-cel-1173273144
11.199.2GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.099.2E-MEXP-807-raw-cel-1173273252
10.099.2GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
10.099.2GSM133894Schroeder_1-12_JS44-starve-96h_Rep1_ATH1GSE5744Response to potassium starvation in rootsLink to GEO
9.499.1GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.399.1GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.4442GO:0042344The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.Link to AmiGO
0.2501GO:0051245Any process that stops, prevents, or reduces the rate of the cellular defense response.Link to AmiGO
0.2221GO:0010363Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.074204130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.047100380Tryptophan metabolismLink to KEGG PATHWAY

Inter-species module comparison

A co-expression module including the rice gene, Os05g0567700, orthologous to the query gene, At1g08930

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.9Os05g0567700--Integral membrane protein2e-5At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.4458.1Os02g0166600--Conserved hypothetical protein5e-2At5g39540-O.I.H.G.S.X.
0.4253.9Os03g0639600--Zinc-finger protein Lsd14e-5At4g20380zinc finger protein (LSD1)O.I.H.G.S.X.
0.4152.4Os03g0843100--Ras-related protein Rab-11B4e-11At1g09630ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)O.I.H.G.S.X.
0.4152.4Os07g0553900--Hypothetical protein1e+0At4g16240unknown proteinO.I.H.G.S.X.
0.3846.9Os01g0959800--Phosphatidylserine decarboxylase1e-9At4g25970PSD3 (phosphatidylserine decarboxylase 3)O.I.H.G.S.X.
0.3846.9Os06g0714200--Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein8e-19At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.3644.0Os03g0567600--Protein of unknown function DUF563 family protein1e-3At5g58000-O.I.H.G.S.X.
0.3541.7Os04g0550700--Conserved hypothetical protein3e+0At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.3541.7Os10g0476400--Snf7 family protein2e-34At1g03950VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)O.I.H.G.S.X.
0.3440.0Os04g0451900--Protein phosphatase 2C-like domain containingprotein6e-11At1g22280protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3440.0Os06g0102700--Arm repeat-containing protein1e-6At3g46510PUB13 (PLANT U-BOX 13)O.I.H.G.S.X.
0.3440.0Os02g0750600--Ubiquitin domain containing protein6e-7At1g22050MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)O.I.H.G.S.X.
0.3338.8Os09g0557800--Nonaspanin (TM9SF) family protein5e-46At5g25100endomembrane protein 70, putativeO.I.H.G.S.X.
0.3236.3Os12g0596800--Ubiquitin interacting motif domain containingprotein1e-12At4g36860zinc ion bindingO.I.H.G.S.X.
0.3236.3Os03g0318600--Transcription factor HBP-1b(c38)4e-15At5g06950AHBP-1BO.I.H.G.S.X.
0.3032.7Os11g0588300--Glutathione transferase AtGST 10 (EC 2.5.1.18)2e-3At5g41210ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)O.I.H.G.S.X.
0.3032.7Os03g0110300--Conserved hypothetical protein2e-3At2g28790osmotin-like protein, putativeO.I.H.G.S.X.
0.3032.7Os07g0632800--Protein kinase domain containing protein1e-48At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.
0.2831.1Os03g0808300--Remorin, C-terminal region domain containingprotein2e-1At1g05270TraB family proteinO.I.H.G.S.X.
0.2727.5Os04g0556300--Glutathione peroxidase-like protein GPX54Hv3e-33At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)O.I.H.G.S.X.
0.2727.5Os11g0199700---2e-2At1g21380VHS domain-containing protein / GAT domain-containing proteinO.I.H.G.S.X.
0.2727.5Os10g0400100--Methionyl-tRNA synthetase, class Ia domaincontaining protein8e-51At4g13780methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeO.I.H.G.S.X.
0.2625.6Os05g0564800--Conserved hypothetical protein1e-3At1g17080unknown proteinO.I.H.G.S.X.
0.2524.1Os02g0193800--ARM repeat fold domain containing protein6e-1At2g05117SCRL9 (SCR-Like 9)O.I.H.G.S.X.
0.2524.1Os01g0780500--SCAMP family protein1e-14At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.2524.1Os03g0215000--Conserved hypothetical protein6e-14At1g76340integral membrane family proteinO.I.H.G.S.X.
0.2422.4Os02g0581300--ASC1 (Alternaria stem canker resistance protein)5e-8At3g25540LAG1O.I.H.G.S.X.
0.2422.4Os04g0517400--Conserved hypothetical protein5e-15At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)O.I.H.G.S.X.
0.2321.2Os01g0936200--Lipase, class 3 family protein6e-3At5g18630lipase class 3 family proteinO.I.H.G.S.X.
0.2321.2Os09g0281700--Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)1e-17At5g47960ATRABA4CO.I.H.G.S.X.
0.2219.4Os09g0490200--EIL31e-12At1g73730EIL3 (ETHYLENE-INSENSITIVE3-LIKE3)O.I.H.G.S.X.
0.2016.5Os03g0101100--Palmitoyl protein thioesterase family protein6e-1At5g47330palmitoyl protein thioesterase family proteinO.I.H.G.S.X.
0.2016.5Os12g0600400--Pyridoxal kinase (EC 2.7.1.35) (Pyridoxine kinase)(Pyridoxal kinase- like protein SOS4) (Salt overlysensitive 4)4e-21At5g37850SOS4 (SALT OVERLY SENSITIVE 4)O.I.H.G.S.X.
0.1915.1Os12g0636800--Ubiquitin-conjugating enzyme 18 (Fragment)5e-13At5g42990UBC18 (ubiquitin-conjugating enzyme 18)O.I.H.G.S.X.
0.1915.1Os03g0638800--Protein kinase domain containing protein2e-32At3g22750protein kinase, putativeO.I.H.G.S.X.
0.1915.1Os08g0536000--Pyruvate dehydrogenase E1 beta subunit isoform 1(EC 1.2.4.1)9e-44At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.1915.1Os06g0656500---2e-2At3g212404CL2 (4-COUMARATE:COA LIGASE 2)O.I.H.G.S.X.
0.1712.6Os05g0102900--Snf7 family protein8e-28At3g10640VPS60.1O.I.H.G.S.X.
0.1510.3Os02g0131200--Glycosyl transferase, family 3 domain containingprotein8e-8At1g70570anthranilate phosphoribosyltransferase, putativeO.I.H.G.S.X.
0.149.3Os06g0622900--RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 24e-3At1g78260RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.149.3Os11g0587500--RabGAP/TBC domain containing protein4e-6At4g27100RAB GTPase activatorO.I.H.G.S.X.
0.105.7Os03g0224200--Response regulator receiver domain containingprotein6e-12At2g01760ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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