Co-expression analysis

Gene ID At1g08390
Gene name nucleic acid binding
Module size 93 genes
NF 0.22
%ile 21.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g08390837359nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.4558.30.87At3g12210820401sequence-specific DNA bindingF:sequence-specific DNA binding;P:biological_process unknown;C:intracellular;MFPOAO.I.H.G.S.X.
0.4355.30.84At4g19540827696INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)F:unknown;P:unknown;C:mitochondrion;BOAMFPO.I.H.G.S.X.
0.4152.40.85At4g01510826763ARV2F:molecular_function unknown;P:sterol metabolic process, sphingolipid metabolic process;C:endoplasmic reticulum, membrane;MFOPO.I.H.G.S.X.
0.4050.80.85At1g26090839150unknown proteinF:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFPO.I.H.G.S.X.
0.4050.80.86At1g78690844205phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:unknown;BMOFPO.I.H.G.S.X.
0.3846.70.85At5g06430830531thioredoxin-relatedF:unknown;P:unknown;C:unknown;BPOO.I.H.G.S.X.
0.3846.70.84At2g03050814834mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.H.G.S.X.
0.3846.70.86At3g07200819908zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVO.I.H.G.S.X.
0.3745.00.86At5g09995830861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.3745.00.84At5g38360833818catalyticF:catalytic activity;P:biological_process unknown;C:unknown;BOPMFAO.I.H.G.S.X.
0.3541.60.86At2g33820817949MBAC1encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosolO.I.H.G.S.X.
0.3541.60.85At5g10620830927-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOAPO.I.H.G.S.X.
0.3439.80.86At3g48040823959ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.O.I.H.G.S.X.
0.3439.80.85At1g74530843794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3338.10.84At5g15760831432plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast, plastid;OBPO.I.H.G.S.X.
0.3338.10.88At3g01130821228unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3235.70.86At3g24030821988hydroxyethylthiazole kinase family proteinF:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPMO.I.H.G.S.X.
0.3133.80.86At1g18340838415basal transcription factor complex subunit-relatedF:general RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:core TFIIH complex;MFOPO.I.H.G.S.X.
0.3133.80.86At1g21840838786UREF (urease accessory protein F)Encodes a urease accessory protein which is essential for the activation of plant urease.O.I.H.G.S.X.
0.3032.10.85At1g78790844215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.2930.30.85At2g35155818082catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.2930.30.85At3g18800821413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.H.G.S.X.
0.2930.30.84At1g02180839543ferredoxin-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2830.30.84At3g58690825038protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.2830.30.84At1g27410839631DNA cross-link repair protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAO.I.H.G.S.X.
0.2830.30.85At3g23710821952chloroplast inner membrane import protein Tic22, putativeF:unknown;P:unknown;C:chloroplast, chloroplast inner membrane;BPOO.I.H.G.S.X.
0.2830.30.87At1g47720841183OSB1 (Organellar Single-stranded)Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination.O.I.H.G.S.X.
0.2830.30.88At3g47390823893cytidine/deoxycytidylate deaminase family proteinF:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMVO.I.H.G.S.X.
0.2830.30.85At2g31530817711EMB2289 (EMBRYO DEFECTIVE 2289)F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:embryonic development ending in seed dormancy, protein secretion;C:chloroplast, membrane;OBPAMO.I.H.G.S.X.
0.2726.20.85At1g71750843505phosphoribosyltransferase family proteinF:transferase activity, hypoxanthine phosphoribosyltransferase activity;P:nucleoside metabolic process, purine ribonucleoside salvage;C:cytoplasm;BOMAPFO.I.H.G.S.X.
0.2726.20.85At4g05090825853inositol monophosphatase family proteinF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMAO.I.H.G.S.X.
0.2726.20.84At3g55080824674SET domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2726.20.85At5g49230834983HRB1 (HYPERSENSITIVE TO RED AND BLUE)Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.O.I.H.G.S.X.
0.2624.40.85At3g52610824427unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.2624.40.85At2g39910818578bindingF:binding;P:biological_process unknown;C:unknown;MPO.I.H.G.S.X.
0.2624.40.85At5g19570832077unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2624.40.85At5g10700830935aminoacyl-tRNA hydrolase/ protein tyrosine phosphataseF:aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation, translation;C:unknown;MOPFO.I.H.G.S.X.
0.2624.40.85At2g22260816759oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;BOFMPVO.I.H.G.S.X.
0.2624.40.85At5g45300834566BMY2 (BETA-AMYLASE 2)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOFO.I.H.G.S.X.
0.2624.40.85At4g19070827645cadmium-responsive protein / cadmium induced protein (AS8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBAO.I.H.G.S.X.
0.2624.40.84At2g386808184505'-nucleotidase/ magnesium ion bindingF:magnesium ion binding, 5'-nucleotidase activity;P:biological_process unknown;C:cytoplasm;MOPO.I.H.G.S.X.
0.2522.60.84At1g08960837416CAX11member of Potassium-dependent sodium-calcium exchanger like-familyO.I.H.G.S.X.
0.2319.30.85At4g18230827549-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFMOPAO.I.H.G.S.X.
0.2319.30.85At4g33410829478signal peptide peptidase family proteinF:aspartic-type endopeptidase activity;P:biological_process unknown;C:endomembrane system, integral to membrane;MPOFO.I.H.G.S.X.
0.2319.30.86At1g29040839778unknown proteinF:unknown;P:unknown;C:chloroplast, vacuole;BOPO.I.H.G.S.X.
0.2319.30.86At3g62050825378-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO.I.H.G.S.X.
0.2319.30.85At5g08320830728unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.2217.50.85At3g56830824850unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.2217.50.85At2g40935818692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOO.I.H.G.S.X.
0.2217.50.86At5g17660831632tRNA (guanine-N7-)-methyltransferaseF:tRNA (guanine-N7-)-methyltransferase activity;P:tRNA modification;C:chloroplast;BOMPFO.I.H.G.S.X.
0.2217.50.84At1g50710841493unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOO.I.H.G.S.X.
0.2115.80.86At5g15390831391tRNA/rRNA methyltransferase (SpoU) family proteinF:RNA binding, RNA methyltransferase activity;P:RNA processing;C:chloroplast;BOMPFAO.I.H.G.S.X.
0.2115.80.85At3g22425821812IGPDEncodes imidazoleglycerolphosphate dehydratase.O.I.H.G.S.X.
0.2115.80.85At4g10090826600unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2014.40.84At2g46580819270pyridoxine 5'-phosphate oxidase-relatedF:FMN binding, pyridoxamine-phosphate oxidase activity;P:pyridoxine biosynthetic process;C:cellular_component unknown;OBMFPO.I.H.G.S.X.
0.2014.40.84At1g03000839315PEX6 (PEROXIN 6)Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.O.I.H.G.S.X.
0.1912.70.85At1g65080842816OXA1 family proteinF:binding;P:protein insertion into membrane;C:membrane;BMFOPO.I.H.G.S.X.
0.1912.70.84At4g17430827454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PFO.I.H.G.S.X.
0.1912.70.84At3g26950822313unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1912.70.84At3g10620820231ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)F:bis(5'-adenosyl)-pentaphosphatase activity, bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.1811.40.85At2g18245816340unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.1811.40.85At5g06060830493tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.1811.40.85At1g08750837397GPI-anchor transamidase, putativeF:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFABO.I.H.G.S.X.
0.1710.20.84At1g79080844249pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.1710.20.84At1g06790837190RNA polymerase Rpb7 N-terminal domain-containing proteinF:DNA-directed RNA polymerase activity;P:transcription;C:cellular_component unknown;MFAOPO.I.H.G.S.X.
0.1710.20.86At3g23325821913splicing factor, putativeF:molecular_function unknown;P:mRNA processing;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.168.80.84At5g16150831472PGLCT (PLASTIDIC GLC TRANSLOCATOR)Encodes a putative plastidic glucose transporter.O.I.H.G.S.X.
0.168.80.84At5g38460833834ALG6, ALG8 glycosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:unknown;C:endoplasmic reticulum membrane;MFOPBO.I.H.G.S.X.
0.168.80.84At1g05430837044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.168.80.84At5g63440836463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.157.80.84At5g41760834180nucleotide-sugar transporter family proteinF:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPFO.I.H.G.S.X.
0.157.80.84At1g55805842030BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.146.80.86At5g14600831312tRNA (adenine-N1-)-methyltransferaseF:tRNA (adenine-N1-)-methyltransferase activity;P:tRNA methylation;C:cellular_component unknown;OBMAFPO.I.H.G.S.X.
0.146.80.85At4g35910829746unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOAO.I.H.G.S.X.
0.146.80.85At1g31020839988ATO2 (Arabidopsis thioredoxin o2)F:unknown;P:cell redox homeostasis;C:unknown;BOMPFAVO.I.H.G.S.X.
0.135.80.84At1g14140837973mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVO.I.H.G.S.X.
0.135.80.84At3g03220821224ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.135.80.86At3g24315822020AtSec20F:molecular_function unknown;P:unknown;C:unknown;MFPOO.I.H.G.S.X.
0.135.80.84At5g22280832288unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.124.90.85At1g23360838945UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;BOAFMPO.I.H.G.S.X.
0.124.90.84At1g53120841746RNA-binding S4 domain-containing proteinF:RNA binding;P:biological_process unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.124.90.84At2g33255817888catalytic/ hydrolase/ phosphoglycolate phosphataseF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast;BOAFPMO.I.H.G.S.X.
0.124.90.85At1g31220840010phosphoribosylglycinamide formyltransferaseN10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamideO.I.H.G.S.X.
0.124.90.84At1g73820843718Ssu72-like family proteinF:phosphoprotein phosphatase activity;P:mRNA processing;C:chloroplast;MFPOO.I.H.G.S.X.
0.114.10.84At2g15290816018TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma.O.I.H.G.S.X.
0.114.10.84At3g33520823150ATARP6Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.O.I.H.G.S.X.
0.103.40.84At2g40410818634Ca(2+)-dependent nuclease, putativeF:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.103.40.85At3g52760824442integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPO.I.H.G.S.X.
0.092.80.85At2g20930816627-F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOPO.I.H.G.S.X.
0.092.80.85At3g12180820395cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.082.30.84At4g17420827453-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.H.G.S.X.
0.082.30.84At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.099.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
50.399.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.499.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.899.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.499.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.899.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.999.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.799.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.499.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.199.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.199.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.199.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.899.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.799.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.799.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.799.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.799.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.099.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.099.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.799.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.199.6GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
16.399.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.099.2E-MEXP-807-raw-cel-1173273060
10.699.2GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.699.2E-MEXP-807-raw-cel-1173273170
9.999.1GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.899.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
9.599.1E-MEXP-807-raw-cel-1173273116
9.199.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
8.999.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.799.0E-ATMX-35-raw-cel-1574334832

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0342GO:0006397Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.Link to AmiGO
0.0292GO:0006839Transport of substances into, out of or within a mitochondrion.Link to AmiGO
0.0211GO:0006166Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.033200510N-Glycan biosynthesisLink to KEGG PATHWAY
0.020200230Purine metabolismLink to KEGG PATHWAY
0.020100730Thiamine metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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