Co-expression analysis

Gene ID At1g07470
Gene name transcription factor IIA large subunit, putative / TFIIA large subunit, putative
Module size 6 genes
NF 0.52
%ile 72.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4253.91.00At1g07470837259transcription factor IIA large subunit, putative / TFIIA large subunit, putativeF:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBVO.I.H.G.S.X.
0.6781.60.89At2g24830817020zinc finger (CCCH-type) family protein / D111/G-patch domain-containing proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOBO.I.H.G.S.X.
0.5974.70.89At2g27285817271unknown proteinF:unknown;P:unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.5570.60.88At4g37120829866SMP2Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size.O.I.H.G.S.X.
0.5065.30.89At2g17350816242unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBO.I.H.G.S.X.
0.4457.20.90At3g52220824387unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.899.9GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
76.199.9GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
51.499.8GSM142754MJ001_ATH1_A5-jones-WT-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
24.899.6GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
23.099.6E-MEXP-722-raw-cel-1062243470
20.299.6E-ATMX-35-raw-cel-1574334848
16.399.5E-MEXP-1138-raw-cel-1432773098
16.299.5E-ATMX-35-raw-cel-1574334864
16.099.5E-MEXP-1138-raw-cel-1432773194
15.499.5E-MEXP-1138-raw-cel-1432773002
15.099.4E-MEXP-1138-raw-cel-1432772970
14.799.4E-MEXP-1138-raw-cel-1432773386
14.699.4GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
14.599.4E-MEXP-1138-raw-cel-1432773066
14.099.4E-MEXP-1138-raw-cel-1432772938
14.099.4E-MEXP-1138-raw-cel-1432773130
13.899.4E-MEXP-1138-raw-cel-1432773034
13.899.4E-MEXP-1138-raw-cel-1432773322
13.199.4GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.899.3E-MEXP-1138-raw-cel-1432773290
12.899.3E-MEXP-1138-raw-cel-1432772778
12.799.3E-MEXP-1138-raw-cel-1432772746
12.699.3E-MEXP-1138-raw-cel-1432773258
12.599.3GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
12.599.3E-MEXP-1138-raw-cel-1432772842
12.399.3GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.299.3E-MEXP-1138-raw-cel-1432772874
12.199.3GSM106913opr3_JA_8 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
12.099.3GSM106969opr3_OPDA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
11.999.3GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.999.3E-ATMX-35-raw-cel-1574334880
11.899.3GSM106967opr3_OPDA_22 hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
11.699.3E-MEXP-1138-raw-cel-1432772810
11.599.3E-MEXP-1138-raw-cel-1432773226
11.499.3GSM106923opr3_OPDA_2 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
11.299.2E-MEXP-1138-raw-cel-1432773354
11.199.2E-MEXP-1138-raw-cel-1432773162
11.199.2GSM106910opr3_JA_2 hrs_rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
10.999.2E-MEXP-1138-raw-cel-1432772906
10.899.2E-MEXP-722-raw-cel-1062243516
10.799.2E-MEXP-722-raw-cel-1062243559
10.799.2GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.599.2E-MEXP-1138-raw-cel-1432772714
10.599.2E-MEXP-1138-raw-cel-1432772618
10.399.2E-MEXP-1138-raw-cel-1432772650
9.899.1GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.799.1GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.599.1E-MEXP-1138-raw-cel-1432772522
9.599.1E-MEXP-1443-raw-cel-1581869688
9.499.1GSM106916opr3_JA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.399.1GSM157305Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
9.299.1GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.199.1GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.199.1E-MEXP-1138-raw-cel-1432772682
9.199.1GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.199.1GSM106973ws_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.199.1E-MEXP-1138-raw-cel-1432772586
9.199.1E-MEXP-1138-raw-cel-1432772554
8.899.0GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.899.0GSM131592ATGE_36_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.799.0GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.799.0GSM106915opr3_JA_22 hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
8.799.0E-MEXP-285-raw-cel-440782791
8.699.0GSM106920opr3_OPDA_0.5 hr_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1331GO:0008284Any process that activates or increases the rate or extent of cell proliferation.Link to AmiGO
0.0911GO:0006367A transcription initiation process that results in RNA synthesis by RNA polymerase II.Link to AmiGO
0.0441GO:0008380The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.051103022Basal transcription factorsLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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