Co-expression analysis

Gene ID At1g05320
Gene name -
Module size 5 genes
NF 0.03
%ile 1.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g05320837031-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.114.10.84At3g07570819948membrane protein, putativeF:dopamine beta-monooxygenase activity;P:histidine catabolic process;C:membrane;PMFOBO.I.H.G.S.X.
0.030.60.84At3g51460824309RHD4 (ROOT HAIR DEFECTIVE4)Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.O.I.H.G.S.X.
0.010.20.85At5g35180833472phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:plasma membrane;POMFVO.I.H.G.S.X.
0.010.20.84At5g66950836829catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.399.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
72.199.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
66.599.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
65.299.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
61.799.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.999.8E-MEXP-285-raw-cel-440782725
46.699.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.599.8GSM253198RGA-GR-DEX-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
45.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.699.8E-MEXP-285-raw-cel-440782791
42.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.799.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.099.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.899.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.499.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.399.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.999.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.699.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.299.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.199.7GSM253196RGA-GR-DEX-REP2GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
31.099.7E-ATMX-35-raw-cel-1574334864
30.899.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.699.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
29.099.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.999.7GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
27.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.599.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
27.499.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
24.599.6E-ATMX-35-raw-cel-1574334880
24.499.6GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
23.799.6GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
23.799.6GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
23.199.6E-MEXP-1138-raw-cel-1432773034
22.899.6GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.799.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.099.6GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
21.599.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.999.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.499.6E-ATMX-35-raw-cel-1574334848
18.799.5GSM2452564hr MOCK Replicate 3GSE9702Identification of putative targets of AP3/PILink to GEO
18.799.5E-MEXP-1138-raw-cel-1432772906
18.299.5E-MEXP-1138-raw-cel-1432772810
17.899.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.199.5GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
15.999.5E-MEXP-1138-raw-cel-1432772522
15.899.5E-MEXP-1138-raw-cel-1432772778
15.699.5E-MEXP-1138-raw-cel-1432772554
15.499.5E-MEXP-1138-raw-cel-1432773002
15.299.4E-MEXP-1138-raw-cel-1432772586
15.199.4E-MEXP-1443-raw-cel-1581869573
15.199.4E-MEXP-1138-raw-cel-1432772938
15.099.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.899.4E-MEXP-1138-raw-cel-1432772714
14.599.4E-MEXP-1138-raw-cel-1432772650
14.499.4E-MEXP-1138-raw-cel-1432773066
14.499.4GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.299.4E-MEXP-1138-raw-cel-1432773098
13.799.4E-MEXP-1138-raw-cel-1432773130
13.599.4E-MEXP-1138-raw-cel-1432773258
13.299.4E-MEXP-1138-raw-cel-1432773162
13.199.4E-MEXP-1138-raw-cel-1432772618
12.999.3GSM253194RGA-GR-DEX-REP1GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
12.999.3E-MEXP-1138-raw-cel-1432773354
12.899.3GSM253197RGA-GR-MOCK-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
12.899.3GSM253195RGA-GR-MOCK-REP2GSE10019Identification of RGA downstream genes by using steroid-inducible systemLink to GEO
12.899.3GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.799.3E-MEXP-1138-raw-cel-1432772746
12.799.3GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.799.3GSM2452544hr MOCK Replicate 1GSE9702Identification of putative targets of AP3/PILink to GEO
12.499.3E-MEXP-1138-raw-cel-1432772842
12.399.3GSM47017Ler 7GSE2473Small RNA biogenesis mutantsLink to GEO
11.899.3E-MEXP-1138-raw-cel-1432773290
11.499.3GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.399.3E-MEXP-1138-raw-cel-1432772874
11.199.2E-MEXP-1138-raw-cel-1432772970
10.999.2E-MEXP-1138-raw-cel-1432773226
10.599.2GSM2531628h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
10.499.2E-MEXP-1138-raw-cel-1432772682
10.499.2GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.199.2E-MEXP-1138-raw-cel-1432773386
10.099.2GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.599.1E-MEXP-1138-raw-cel-1432773322
9.299.1GSM47019Ler 9GSE2473Small RNA biogenesis mutantsLink to GEO
9.099.1GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.999.0GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
8.699.0E-MEXP-148-raw-cel-350529179

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0006548The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.Link to AmiGO
0.1181GO:0048768Localized growth of a plant root hair tip by extension of the cell wall.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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