Co-expression analysis

Gene ID At1g03740
Gene name ATP binding / kinase/ protein kinase/ protein serine/threonine kinase
Module size 6 genes
NF 0.48
%ile 68.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4659.81.00At1g03740839423ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.H.G.S.X.
0.8089.80.87At1g18390838420ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.7385.50.86At1g18380--O.I.H.G.S.X.
0.6781.60.86At4g11850826791PLDGAMMA1phospholipase D (gamma)O.I.H.G.S.X.
0.4457.20.86At2g20960816630pEARLI4F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAO.I.H.G.S.X.
0.2930.30.87At2g02220814753PSKR1 (PHYTOSULFOKIN RECEPTOR 1)Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
104.499.9GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
45.899.8E-MEXP-791-raw-cel-1122937587
39.899.8E-MEXP-791-raw-cel-1122937623
25.899.7E-MEXP-791-raw-cel-1122937605
23.999.6GSM39200Col_C2GSE2169rre1 and rre2 mutantsLink to GEO
22.699.6GSM39203Col_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
18.799.5GSM39206Col_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
17.299.5GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
15.699.5GSM39204Col_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
14.799.4GSM39192RRE1_C2GSE2169rre1 and rre2 mutantsLink to GEO
13.599.4GSM39205Col_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
12.299.3GSM39201Col_C3GSE2169rre1 and rre2 mutantsLink to GEO
11.999.3GSM39208RRE2_C2GSE2169rre1 and rre2 mutantsLink to GEO
11.899.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.599.3GSM39199Col_C1GSE2169rre1 and rre2 mutantsLink to GEO
11.599.3GSM39191RRE1_C1GSE2169rre1 and rre2 mutantsLink to GEO
11.299.2GSM39193RRE1_C3GSE2169rre1 and rre2 mutantsLink to GEO
10.799.2GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.099.2GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
9.699.1GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
9.599.1GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
8.799.0GSM27361WT RootGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0631GO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.Link to AmiGO
0.0151GO:0007169The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.Link to AmiGO
0.0151GO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.100100565Ether lipid metabolismLink to KEGG PATHWAY
0.056100564Glycerophospholipid metabolismLink to KEGG PATHWAY
0.028104144EndocytosisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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