Co-expression analysis

Gene ID At1g02880
Module size 5 genes
NF 0.20
%ile 18.5

Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2115.81.00At1g02880839303TPK1 (THIAMIN PYROPHOSPHOKINASE1)Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.O.I.H.G.S.X.
0.5773.80.84At5g09690830828magnesium transporter CorA-like family protein (MRS2-7)F:metal ion transmembrane transporter activity;P:metal ion transport;C:membrane;PFOMBO.I.H.G.S.X.
0.3133.80.82At3g03120821079ATARFB1C (ADP-ribosylation factor B1C)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.2217.50.81At5g64180836539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X. 4'-kinase family proteinF:tetraacyldisaccharide 4'-kinase activity;P:lipid A biosynthetic process;C:membrane;OBPMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.2GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
8.999.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.599.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0006772The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.Link to AmiGO
0.1671GO:0009245The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid moiety of bacterial lipopolysaccharides, consisting of six fatty acyl chains linked to two glucosamine residues.Link to AmiGO
0.0201GO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the grape gene, 1616760_at, orthologous to the query gene, At1g02880

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5779.81616760_at-hypothetical protein LOC100246863-3e-9At1g02880TPK1 (THIAMIN PYROPHOSPHOKINASE1)O.I.H.G.S.X.
0.4666.51610149_at-hypothetical protein LOC100267843-2e-3At1g27760interferon-related developmental regulator family protein / IFRD protein familyO.I.H.G.S.X.
0.4260.11621150_at-hypothetical protein LOC100248338-1e-8At5g39040ATTAP2O.I.H.G.S.X.
0.4260.11612501_at-with no lysine kinase-2e+0At5g62050OXA1O.I.H.G.S.X.
0.3345.71622317_at---4e-1At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.2837.71619005_at---3e-14At5g46410NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.2632.01622463_at-hypothetical protein LOC100252976-2e-22At1g21065unknown proteinO.I.H.G.S.X.
0.2327.51610863_at-cullin 1-2e-19At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.2022.41611871_at-dehydroascorbate reductase-2e-9At1g19570DHAR1 (dehydroascorbate reductase)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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