CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At1g02410

Gene name cytochrome c oxidase assembly protein CtaG / Cox11 family

Module size 5 genes

NF 0.53

%ile 74.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.89 94.6 1.00 At1g02410 839364 cytochrome c oxidase assembly protein CtaG / Cox11 family F:copper ion binding;P:biological_process unknown;C:unknown;OBFMP O.I. H.G. S.X.
0.57 73.8 0.92 At1g03250 838557 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.57 73.8 0.92 At4g09720 826558 Ras-related GTP-binding protein, putative F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV O.I. H.G. S.X.
0.44 57.2 0.90 At4g21160 827864 ZAC ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. O.I. H.G. S.X.
0.35 41.6 0.91 At4g16510 827349 YbaK/prolyl-tRNA synthetase-related F:molecular_function unknown;P:unknown;C:cellular_component unknown;OP O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.8 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.3 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.2 99.6 E-MEXP-1094-raw-cel-1379507473
20.6 99.6 E-MEXP-1094-raw-cel-1379507433
12.9 99.3 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.4 99.3 E-MEXP-1094-raw-cel-1379507513
10.5 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.1 99.2 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.7 99.1 E-MEXP-1094-raw-cel-1379507233
8.9 99.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.7 99.0 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
8.6 99.0 E-MEXP-1094-raw-cel-1379507193
8.6 99.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0006913 The directed movement of molecules between the nucleus and the cytoplasm.
0.031 1 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.024 2 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.014 1 00190 Oxidative phosphorylation
0.002 1 01100 Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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