Co-expression analysis

Gene ID At1g02250
Gene name anac005 (Arabidopsis NAC domain containing protein 5)
Module size 97 genes
NF 0.48
%ile 68.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g02250839390anac005 (Arabidopsis NAC domain containing protein 5)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.7284.80.79At1g29870839865tRNA synthetase class II (G, H, P and S) family proteinF:glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation;C:cytoplasm;OBAMFPO.I.H.G.S.X.
0.6781.60.83At5g61090836230nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVAO.I.H.G.S.X.
0.6579.60.80At3g46340823779leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.6579.60.83At5g40050834002F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.6579.60.79At3g06090819782unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6579.60.79At3g56660824833BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.H.G.S.X.
0.6378.10.81At4g33870829530peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.H.G.S.X.
0.6378.10.80At2g45940819202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6176.70.82At1g53360841772F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6075.70.80At3g61510825324ACS1 (ACC SYNTHASE 1)Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.O.I.H.G.S.X.
0.5974.70.79At5g27510832811protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.5873.80.79At1g62170842513serpin family protein / serine protease inhibitor family proteinF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAFO.I.H.G.S.X.
0.5873.80.80At1g50350841457-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.80At1g43810840978unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.79At1g69660843302meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.5873.80.81At1g20800838671F-box family proteinF-box family proteinO.I.H.G.S.X.
0.5773.80.79At3g562803769726-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.80At2g04920815039F-box family protein (FBX9)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;POO.I.H.G.S.X.
0.5773.80.79At4g28130828928diacylglycerol kinase accessory domain-containing proteinF:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOBO.I.H.G.S.X.
0.5773.80.80At1g70110843347lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.5773.80.81At1g26360839178MES13 (METHYL ESTERASE 13)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.H.G.S.X.
0.5673.00.81At3g45460823686zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.5673.00.79At2g43450818946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.80At2g044903768047transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.81At1g77860844122KOM (KOMPEITO)mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane ProteinO.I.H.G.S.X.
0.5673.00.82At2g27650817311ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POMFO.I.H.G.S.X.
0.5673.00.81At5g11370831008-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5673.00.81At5g50970835170WD-40 repeat family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPO.I.H.G.S.X.
0.5570.60.83At2g24255816960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.60.82At2g31420817700DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.5469.50.81At2g355903768541-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.79At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.H.G.S.X.
0.5469.50.82At4g35590829711RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:endomembrane system;POMBFAO.I.H.G.S.X.
0.5469.50.80At2g34280817989S locus F-box-related / SLF-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.5469.50.79At1g493703767414-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.80At3g31430822909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5368.60.80At5g28790832995transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.79At5g52800835357DNA primaseF:DNA primase activity;P:DNA replication;C:cellular_component unknown;MOPVO.I.H.G.S.X.
0.5368.60.79At4g12220826830-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.80At3g18460821375unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.5368.60.79At4g22940828393protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.H.G.S.X.
0.5267.40.79At1g35610840457DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;POMO.I.H.G.S.X.
0.5267.40.80At5g66710836804protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.5267.40.81At3g15910820834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5267.40.80At5g22680832331-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5267.40.79At3g54060824573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.H.G.S.X.
0.5267.40.79At2g23945816927chloroplast nucleoid DNA-binding protein-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMOFO.I.H.G.S.X.
0.5166.30.79At2g44030819008kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMBOFAVO.I.H.G.S.X.
0.5166.30.80At1g67220843042HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2)F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPFO.I.H.G.S.X.
0.5166.30.81At2g261352745561zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:membrane;MFOPVO.I.H.G.S.X.
0.5166.30.80At1g14520838014MIOX1 (MYO-INISITOL OXYGENASE)Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.O.I.H.G.S.X.
0.5166.30.79At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBO.I.H.G.S.X.
0.5166.30.80At4g05260825874ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POO.I.H.G.S.X.
0.5065.30.82At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBO.I.H.G.S.X.
0.5065.30.80At2g38100818388proton-dependent oligopeptide transport (POT) family proteinF:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOFO.I.H.G.S.X.
0.5065.30.80At4g041203770008transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.79At1g19930838582kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVAO.I.H.G.S.X.
0.4862.50.80At2g06960815265oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PBOFMO.I.H.G.S.X.
0.4862.50.80At4g28170828932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4862.50.79At5g49750835038leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVO.I.H.G.S.X.
0.4862.50.79At1g46840841118F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PO.I.H.G.S.X.
0.4761.20.79At3g14710820699F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.20.79At2g02750814804pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMO.I.H.G.S.X.
0.4659.80.80At1g60930842384ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B)AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination.O.I.H.G.S.X.
0.4659.80.81At5g08090830703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO.I.H.G.S.X.
0.4558.30.79At2g188203768266transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.80At3g08810820028kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.4457.20.79At5g52460835322EDA41 (embryo sac development arrest 41)F:unknown;P:polar nucleus fusion;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.82At1g64070842711RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1)Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.H.G.S.X.
0.4457.20.80At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyO.I.H.G.S.X.
0.4457.20.79At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.4457.20.80At2g27520817298F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.4457.20.80At4g17130--O.I.H.G.S.X.
0.4457.20.79At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.80At3g16710820923-F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.4355.30.80At3g26480822253transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:unknown;BMFOPAO.I.H.G.S.X.
0.4355.30.80At3g52510824416-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4253.90.80At5g37040833674F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.79At4g03950825705glucose-6-phosphate/phosphate translocator, putativeF:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFBO.I.H.G.S.X.
0.4253.90.79At1g68930843226pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.4050.80.79At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.79At1g23700838980protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAO.I.H.G.S.X.
0.3846.70.79At5g23770832442RNA bindingF:RNA binding;P:unknown;C:unknown;POBFMO.I.H.G.S.X.
0.3846.70.80At5g58280835940transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO.I.H.G.S.X.
0.3745.00.81At1g50910841513unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.3643.60.80At3g20700821617F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3643.60.80At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)O.I.H.G.S.X.
0.3643.60.79At5g12240831099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.79At1g49260841350-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3439.80.81At3g06600819839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.79At3g53360824504pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.3235.70.80At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.3032.10.79At3g28640822494pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFO.I.H.G.S.X.
0.3032.10.80At3g49740824136pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:unknown;POFMBO.I.H.G.S.X.
0.2014.40.79At1g74400843781pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.H.G.S.X.
0.124.90.79At4g13330826963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
51.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.199.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
45.999.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.499.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.799.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.099.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.699.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.299.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.799.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.699.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.999.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.099.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
28.299.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.199.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.099.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.699.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.599.6GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
20.599.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.399.5GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.899.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
16.799.5E-ATMX-35-raw-cel-1574334816
13.499.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
12.999.3GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.799.3E-ATMX-35-raw-cel-1574334800
10.299.2E-ATMX-35-raw-cel-1574334832

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0201GO:0015712The directed movement of hexose phosphate into, out of, within or between cells.Link to AmiGO
0.0201GO:0006426The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO
0.0191GO:0007205The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.016100053Ascorbate and aldarate metabolismLink to KEGG PATHWAY
0.015100562Inositol phosphate metabolismLink to KEGG PATHWAY
0.014100970Aminoacyl-tRNA biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage