Co-expression analysis

Gene ID At1g02050
Gene name chalcone and stilbene synthase family protein
Module size 16 genes
NF 0.93
%ile 99.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At1g02050839280chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOFO.I.H.G.S.X.
1.00100.00.94At1g69500843283electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAVO.I.H.G.S.X.
1.00100.00.95At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POO.I.H.G.S.X.
0.9496.70.94At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.O.I.H.G.S.X.
0.9496.70.93At3g07450819933protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9496.70.94At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.O.I.H.G.S.X.
0.9496.70.93At3g52130824377protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9496.70.94At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9496.70.96At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFO.I.H.G.S.X.
0.9496.70.95At4g35420829695dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAVO.I.H.G.S.X.
0.9195.60.92At5g07230830614protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9095.10.94At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVO.I.H.G.S.X.
0.9095.10.93At5g16920831555-F:molecular_function unknown;P:unknown;C:endomembrane system;POO.I.H.G.S.X.
0.9095.10.92At5g62080836328protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.8793.50.92At1g01280839470CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2)member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).O.I.H.G.S.X.
0.8290.90.91At1g02813839360unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.

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Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.899.8GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
42.899.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
39.699.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.799.8GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
29.599.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.199.6GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.599.5GSM258002LMPC-derived phloem_1GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
16.599.5GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.799.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.299.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.899.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.299.4GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.799.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.499.4GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.099.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.099.4GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.399.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.099.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.399.3GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
11.299.2GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.299.2GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.099.2GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
10.799.2GSM133407Bramke_A1-warre-WTCGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.Link to GEO
10.799.2E-ATMX-35-raw-cel-1574334848
10.599.2GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.399.2GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.399.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.399.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.399.2GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.199.2E-MEXP-285-raw-cel-440782725
10.099.2E-MEXP-1138-raw-cel-1432773066
9.999.1GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.899.1GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.899.1E-MEXP-285-raw-cel-440782791
9.799.1E-MEXP-1138-raw-cel-1432773034
9.799.1GSM258003LMPC-derived phloem_2GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
9.699.1GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.599.1E-MEXP-1138-raw-cel-1432773386
9.499.1GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.499.1E-MEXP-1138-raw-cel-1432773258
9.399.1E-MEXP-1138-raw-cel-1432773002
9.399.1GSM133403Bramke_A3-warre-S6CGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.Link to GEO
9.399.1E-MEXP-1138-raw-cel-1432772682
9.099.1E-MEXP-1138-raw-cel-1432773354
9.099.1E-MEXP-1138-raw-cel-1432773226
8.999.0GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.999.0E-MEXP-1138-raw-cel-1432773130
8.999.0GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.899.0GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.899.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.799.0E-MEXP-1138-raw-cel-1432773322
8.799.0E-MEXP-1138-raw-cel-1432773290
8.799.0GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.699.0GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.4006GO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.Link to AmiGO
0.3163GO:0080110The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer.Link to AmiGO
0.1482GO:0009699The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.049100130Ubiquinone and other terpenoid-quinone biosynthesisLink to KEGG PATHWAY
0.017100940Phenylpropanoid biosynthesisLink to KEGG PATHWAY
0.011101063Biosynthesis of alkaloids derived from shikimate pathwayLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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