Co-expression analysis

Gene ID AFFX-Vvi-actin-3_c7_s_at
Gene name actin 1
Homology with ArabidopsisSimilar to : - (HF=)
Module size 6 genes
NF 0.89
%ile 99.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.99AFFX-Vvi-actin-3_c7_s_atactin 1--O.I.H.G.S.X.
0.8394.60.99AFFX-Vvi-actin-3_c8_s_atactin 1--O.I.H.G.S.X.
0.8394.60.99AFFX-Vvi-actin-3_c2_s_atactin 1--O.I.H.G.S.X.
0.8394.60.99AFFX-Vvi-actin-3_c6_s_atactin 1--O.I.H.G.S.X.
0.7390.80.991606368_s_atCF208516actin 1-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.7390.80.99AFFX-Vvi-actin-3_s_atactin 1--O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.00.99AFFX-Vvi-actin-3_c3_s_atactin 1--O.I.H.G.S.X.
0.9299.00.991609191_s_atCB978023hypothetical protein LOC100258056-0At5g26751ATSK11O.I.H.G.S.X.
0.8695.10.99AFFX-Vvi-actin-3_c4_s_atactin 1--O.I.H.G.S.X.
0.7792.30.99AFFX-Vvi-actin-3_c5_s_atactin 1--O.I.H.G.S.X.
0.6787.90.98AFFX-Vvi-actin-3_c1_s_atactin 1--O.I.H.G.S.X.
0.6787.90.991618063_atCB980274hypothetical protein LOC100259885-7e-6At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.5779.80.97AFFX-Vvi-ef1a_c3_s_atVvi.8075.1.S1_c3---O.I.H.G.S.X.
0.5577.30.981615516_atCF511735hypothetical protein LOC100255660-5e+0At4g11760LCR17 (Low-molecular-weight cysteine-rich 17)O.I.H.G.S.X.
0.5577.30.991616981_atCB971105phospholipase D alpha-4e-52At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)O.I.H.G.S.X.
0.5577.30.991612293_atCB346119hypothetical protein LOC100264912-1e-65At4g0900014-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)O.I.H.G.S.X.
0.5375.20.981617614_atCF205963.1--2e-95At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.5375.20.991621991_atCB978460hypothetical protein LOC100243393-1e-1At2g41060RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5072.70.971621275_atBQ800031--8e-9At2g37195unknown proteinO.I.H.G.S.X.
0.5072.70.981606436_s_atCB007992hypothetical protein LOC100243286-7e-4At4g30430TET9 (TETRASPANIN9)O.I.H.G.S.X.
0.5072.70.98AFFX-Vvi-ef1a_c2_s_atVvi.8075.1.S1_c2---O.I.H.G.S.X.
0.5072.70.991615636_atCB979153hypothetical protein LOC100264871-5e+0At5g63150unknown proteinO.I.H.G.S.X.
0.4767.70.98AFFX-Vvi-ef1a_c8_s_atVvi.8075.1.S1_c8---O.I.H.G.S.X.
0.4666.50.991613460_atCB979154hypothetical protein LOC100260001-2e+0At5g43420zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4666.50.971615485_atCF215087hypothetical protein LOC100263292-6e-3At5g18362unknown proteinO.I.H.G.S.X.
0.4464.10.981615514_s_atCF518509hypothetical protein LOC100241557-1e-20At5g47120ATBI1 (BAX INHIBITOR 1)O.I.H.G.S.X.
0.4464.10.991613972_atBQ797720hypothetical protein LOC100267580-4e+0At5g6230040S ribosomal protein S20 (RPS20C)O.I.H.G.S.X.
0.4464.10.991615237_atCB913715hypothetical protein LOC100246592-3e-18At2g37110unknown proteinO.I.H.G.S.X.
0.4464.10.991620790_atCF515444hypothetical protein LOC100249710-5e-4At5g43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4464.10.991611228_a_atCB922630hypothetical protein LOC100257366-2e+0At3g60260phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4464.10.991611412_atCF517248hypothetical protein LOC100244694-2e+0At5g37480unknown proteinO.I.H.G.S.X.
0.4057.70.971617661_atCF516668hypothetical protein LOC100249311-4e+0At4g00580COP1-interacting protein-relatedO.I.H.G.S.X.
0.4057.70.991612360_atCB970071hypothetical protein LOC100244110-2e-152At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.3853.60.971621896_atCF604980hypothetical protein LOC100265858-1e-9At3g05100-O.I.H.G.S.X.
0.3853.60.991613546_atCF213271hypothetical protein LOC100252142-4e-1At1g74450unknown proteinO.I.H.G.S.X.
0.3853.60.981613297_atCF205415.1hypothetical protein LOC100249948-2e-24At4g00600tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.3650.70.991618690_atCF207597hypothetical protein LOC100259195-3e-16At1g20110zinc finger (FYVE type) family proteinO.I.H.G.S.X.
0.3548.50.98AFFX-Vvi-ef1a_c4_s_atVvi.8075.1.S1_c4---O.I.H.G.S.X.
0.3548.50.98AFFX-Vvi-ef1a_c7_s_atVvi.8075.1.S1_c7---O.I.H.G.S.X.
0.3548.50.991608604_atBQ796866hypothetical protein LOC100260136-7e-24At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.3548.50.991607686_s_atCF206122.1similar to 60S ribosomal protein L29-7e-10At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.3446.80.981622588_s_atCF207335hypothetical protein LOC100267071-0At5g49460ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)O.I.H.G.S.X.
0.3345.70.97AFFX-Vvi-ef1a_c5_s_atVvi.8075.1.S1_c5---O.I.H.G.S.X.
0.3345.70.981615265_atCF514099hypothetical protein LOC100262252-2e-5At4g14160transport protein, putativeO.I.H.G.S.X.
0.3345.70.981616240_atCB348416hypothetical protein LOC100263190-2e-2At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.3243.10.981613706_atCA808981hypothetical protein LOC100258971-2e-15At4g38930ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.3243.10.991616036_atCF513213hypothetical protein LOC100241363-7e-4At4g23630BTI1 (VIRB2-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.3141.30.981620612_s_atCF208882similar to ADP-ribosylation factor-4e-128At2g47170ARF1A1CO.I.H.G.S.X.
0.3141.30.981608356_atCF609600hypothetical protein LOC100266187-2e+0At1g15220CCMHO.I.H.G.S.X.
0.3141.30.98AFFX-Vvi-actin-M_s_atactin 1--O.I.H.G.S.X.
0.3141.30.98AFFX-Vvi-ef1a_c6_s_atVvi.8075.1.S1_c6---O.I.H.G.S.X.
0.2937.70.971622309_atCB910741hypothetical protein LOC100251543-3e-1At4g08640ATP binding / protein bindingO.I.H.G.S.X.
0.2937.70.971607928_atCF201793.1--5e-3At4g08230glycine-rich proteinO.I.H.G.S.X.
0.2937.70.981614062_atCB982394hypothetical protein LOC100245196-5e+0At5g07630lipid transporterO.I.H.G.S.X.
0.2937.70.981620980_s_atCF209157hypothetical protein LOC100255909-7e-6At1g14685BPC2 (BASIC PENTACYSTEINE 2)O.I.H.G.S.X.
0.2937.70.991617903_atCF207014.1hypothetical protein LOC100266203-7e+0At5g54850unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
1.479.9GSM436373Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.377.9GSM436417V. riparia (VR, PI588259) SD, 13h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.377.9GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.377.9GSM436415V. riparia (VR, PI588259) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.377.9GSM436421V. riparia (VR, PI588259) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.275.6GSM436375Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.275.6GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.275.6GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.275.6GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.275.6GSM287884Green soft berry C7 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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