Co-expression analysis

Gene ID	AFFX-Vvi-actin-3_c7_s_at
Gene name	actin 1
Homology with Arabidopsis	Similar to : - (HF=)
Module size	6 genes
NF	0.89
%ile	99.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	AFFX-Vvi-actin-3_c7_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	AFFX-Vvi-actin-3_c8_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	AFFX-Vvi-actin-3_c2_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	AFFX-Vvi-actin-3_c6_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	AFFX-Vvi-actin-3_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.4	79.9	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.3	77.9	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.3	77.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.3	77.9	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.3	77.9	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.2	75.6	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.2	75.6	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.2	75.6	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.2	75.6	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.2	75.6	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, , orthologous to the query gene, AFFX-Vvi-actin-3_c7_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0		-	-	-	-	-	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.6195.1.A1_x_at	-	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.5825.1.A1_at	-	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.1693.1.A1_at	-	-	-	4e-3	At3g55670	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.13841.1.S1_at	-	-	-	2e-42	At3g62270	anion exchange family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.485.1.A1_at	-	-	-	8e-1	Atmg00140	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage