Co-expression analysis

Gene ID AFFX-CreX-5_at
Gene name
Homology with ArabidopsisSimilar to : - (HF=)
Module size 6 genes
NF 0.89
%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.99AFFX-CreX-5_at---O.I.H.G.S.X.
0.8394.60.99AFFX-CreX-3_at---O.I.H.G.S.X.
0.8394.60.99AFFX-r2-P1-cre-5_at---O.I.H.G.S.X.
0.8093.60.99AFFX-BioDn-3_at---O.I.H.G.S.X.
0.7792.30.99AFFX-r2-P1-cre-3_at---O.I.H.G.S.X.
0.6787.90.99AFFX-r2-Ec-bioD-3_at---O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
1.00100.00.99AFFX-Vvi-X03453-2_s_at---O.I.H.G.S.X.
0.6787.90.98AFFX-r2-Ec-bioB-5_at---O.I.H.G.S.X.
0.6787.90.98AFFX-r2-Ec-bioB-3_at---O.I.H.G.S.X.
0.6384.30.98AFFX-r2-Ec-bioD-5_at---O.I.H.G.S.X.
0.5980.60.98AFFX-BioB-3_at---O.I.H.G.S.X.
0.5577.30.981606505_atCB970568hypothetical protein LOC100257948-3e+0At3g21570unknown proteinO.I.H.G.S.X.
0.5577.30.981610728_atCA808724--1e-180Atcg00800-O.I.H.G.S.X.
0.5072.70.97AFFX-BioB-5_at---O.I.H.G.S.X.
0.5072.70.97AFFX-r2-Ec-bioB-M_at---O.I.H.G.S.X.
0.4868.80.97AFFX-BioDn-5_at---O.I.H.G.S.X.
0.4868.80.98AFFX-BioB-M_at---O.I.H.G.S.X.
0.4260.10.96AFFX-BioC-5_at---O.I.H.G.S.X.
0.4260.10.96AFFX-r2-Ec-bioC-3_at---O.I.H.G.S.X.
0.4260.10.96AFFX-r2-Ec-bioC-5_at---O.I.H.G.S.X.
0.3548.50.96AFFX-BioC-3_at---O.I.H.G.S.X.
0.3345.70.981619498_a_atCF511021hypothetical protein LOC100262348-3e-8At4g38710glycine-rich proteinO.I.H.G.S.X.
0.3141.30.961607118_atCB982987--2e+0At3g61090unknown proteinO.I.H.G.S.X.
0.3039.40.971612713_atBQ797805similar to histone H3-3e-57At5g10980histone H3O.I.H.G.S.X.
0.2937.70.981611557_s_atCF214257hypothetical protein LOC100267006-1e-38At1g13950ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)O.I.H.G.S.X.
0.2734.00.981607580_s_atAF501624.1similar to histone H3 /// similar to histone H3-6e-87At4g40040histone H3.2O.I.H.G.S.X.
0.2734.00.981609086_s_atCA808952similar to F2D10.18-6e-16At1g20696HMGB3 (HIGH MOBILITY GROUP B 3)O.I.H.G.S.X.
0.2530.50.971621756_atCA818430hypothetical protein LOC100260561-1e-25At1g61780postsynaptic protein-relatedO.I.H.G.S.X.
0.2530.50.971613915_s_atCA810703hypothetical protein LOC100263937-7e-90At4g24740AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.692.5GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.390.7GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.390.7GSM436406V. riparia (VR, PI588259) LD, 15h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436364Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436386Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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