Co-expression analysis

Gene ID	AFFX-CreX-5_at
Gene name
Homology with Arabidopsis	Similar to : - (HF=)
Module size	6 genes
NF	0.89
%ile	99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	AFFX-CreX-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	AFFX-CreX-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	AFFX-r2-P1-cre-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	AFFX-BioDn-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.99	AFFX-r2-P1-cre-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	AFFX-r2-Ec-bioD-3_at		-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, , orthologous to the query gene, AFFX-CreX-5_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0		-	-	-	-	-	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.6195.1.A1_x_at	-	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.5825.1.A1_at	-	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.1693.1.A1_at	-	-	-	4e-3	At3g55670	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.13841.1.S1_at	-	-	-	2e-42	At3g62270	anion exchange family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.485.1.A1_at	-	-	-	8e-1	Atmg00140	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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