Co-expression analysis

Gene ID	9507414_R_4264-4644_at
Gene name
Homology with Arabidopsis	Similar to At5g06320: NHL3 (HF=1e+1)
Module size	6 genes
NF	0.73
%ile	93.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.97	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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