Co-expression analysis

Gene ID	1622886_at
Gene name	hypothetical protein LOC100252460
Homology with Arabidopsis	Similar to At1g52540: protein kinase, putative (HF=3e-13)
Module size	6 genes
NF	0.18
%ile	27.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1622886_at	CB348288	hypothetical protein LOC100252460	-	3e-13	At1g52540	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1614534_at	CF603286	hypothetical protein LOC100253600	-	3e-38	At4g15080	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1612204_at	CB921241	hypothetical protein LOC100256288	-	1e-47	At3g03110	XPO1B	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1609877_at	CF517839	hypothetical protein LOC100264670	-	2e-28	At2g26460	RED family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1618241_at	CF513295	hypothetical protein LOC100252311	-	6e-28	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.98	1616840_at	CF608637	hypothetical protein LOC100255499	-	9e-15	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.7	93.0	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.5	91.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.5	91.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage