Co-expression analysis

Gene ID	1622880_at
Gene name
Homology with Arabidopsis	Similar to At3g15020: malate dehydrogenase (NAD), mitochondrial, putative (HF=2e-1)
Module size	7 genes
NF	0.40
%ile	59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.95	1622880_at	CF404749	-	-	2e-1	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.95	1610729_at	CD798441	hypothetical protein LOC100257029	-	3e+0	At5g44020	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.95	1616710_at	CF515503	hypothetical protein LOC100248331	-	2e-8	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1619190_at	CD720196	hypothetical protein LOC100254635	-	1e-7	At5g24760	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1607578_at	CF415519	hypothetical protein LOC100247175	-	1e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1608211_at	CD798213	hypothetical protein LOC100247578	-	6e+0	At3g55490	-	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1611440_at	CB978779	hypothetical protein LOC100257657	-	1e-8	At1g49840	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.4	95.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.2	94.9	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
3.1	94.6	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.8	93.4	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.7	93.0	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage